Cow genome map
| Conread name: | Ss1.1-Emb1-C0005182_F21.5 |
| Conread position: | 2-324 |
| Cow position: | chr21:4456927-4457264 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 2-480 |
| Cow position: | chr21:23811976-23812469 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 328 |
| Conread position: | 3-309 |
| Cow position: | chr21:37045014-37045333 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 7-324 |
| Cow position: | chr21:1292075-1291753 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 7-344 |
| Cow position: | chr21:18820311-18819970 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 166 |
| Conread position: | 11-309 |
| Cow position: | chr21:2674501-2674189 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 21, 42 |
| Conread position: | 11-323 |
| Cow position: | chr21:2476399-2476102 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 229 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 67, 25 |
| Conread position: | 48-323 |
| Cow position: | chr21:26650202-26650480 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 51-246 |
| Cow position: | chr21:4222523-4222333 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 23, 112 |
| Conread position: | 52-181 |
| Cow position: | chr21:2769296-2769166 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 100 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 52-275 |
| Cow position: | chr21:992860-992640 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 52-298 |
| Cow position: | chr21:40271512-40271265 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 148 |
| Conread position: | 52-304 |
| Cow position: | chr21:48116268-48116519 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 68 |
| Conread position: | 52-309 |
| Cow position: | chr21:11453491-11453233 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 52-310 |
| Cow position: | chr21:20744600-20744345 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 187 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 22, 202 |
| Conread position: | 52-317 |
| Cow position: | chr21:6339731-6339998 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 52-323 |
| Cow position: | chr21:4090814-4091088 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 52-324 |
| Cow position: | chr21:2529961-2529690 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 8 |
| Conread position: | 52-324 |
| Cow position: | chr21:13123839-13123568 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 112 |
| Conread position: | 52-325 |
| Cow position: | chr21:26638300-26638022 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 52-336 |
| Cow position: | chr21:4589826-4589541 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 160 |
| Conread position: | 52-338 |
| Cow position: | chr21:2416393-2416671 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 128 |
| Conread position: | 52-344 |
| Cow position: | chr21:4086966-4087260 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 22, 75 |
| Conread position: | 52-344 |
| Cow position: | chr21:11505752-11506060 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 52-345 |
| Cow position: | chr21:7267380-7267074 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 219 |
| Conread position: | 52-346 |
| Cow position: | chr21:8678195-8677900 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 52-349 |
| Cow position: | chr21:12055836-12055532 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 52-359 |
| Cow position: | chr21:46915753-46916069 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 52-360 |
| Cow position: | chr21:2510816-2511132 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 52-379 |
| Cow position: | chr21:23860956-23861271 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 118, 30 |
| Conread position: | 52-476 |
| Cow position: | chr21:9891758-9892198 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 42 |
| Conread position: | 52-480 |
| Cow position: | chr21:359181-359627 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 150 |
| Conread position: | 53-304 |
| Cow position: | chr21:3778932-3779184 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 53-324 |
| Cow position: | chr21:2502058-2502328 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 203 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 23, 90 |
| Conread position: | 53-325 |
| Cow position: | chr21:39425229-39425506 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 53-346 |
| Cow position: | chr21:3798205-3797910 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 54-283 |
| Cow position: | chr21:47948276-47948505 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 151 |
| Conread position: | 54-303 |
| Cow position: | chr21:10850247-10850496 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 166 |
| Conread position: | 54-304 |
| Cow position: | chr21:31559488-31559238 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 102 |
| Conread position: | 54-309 |
| Cow position: | chr21:10566840-10567091 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 158 |
| Conread position: | 54-309 |
| Cow position: | chr21:30599753-30599503 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 62 |
| Conread position: | 54-324 |
| Cow position: | chr21:2883581-2883311 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 142 |
| Conread position: | 54-347 |
| Cow position: | chr21:146090-146383 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 158 |
| Conread position: | 54-347 |
| Cow position: | chr21:1191330-1191624 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 143 |
| Conread position: | 54-347 |
| Cow position: | chr21:30561969-30562263 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 257 |
| Conread position: | 54-478 |
| Cow position: | chr21:4183692-4184094 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 76 |
| Conread position: | 60-264 |
| Cow position: | chr21:47939649-47939849 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 15, 124 |
| Conread position: | 60-269 |
| Cow position: | chr21:3426658-3426868 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 60-307 |
| Cow position: | chr21:2788820-2788572 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 170 |
| Conread position: | 60-324 |
| Cow position: | chr21:4077012-4077277 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 169 |
| Conread position: | 60-324 |
| Cow position: | chr21:34293189-34293453 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 188 |
| Conread position: | 60-324 |
| Cow position: | chr21:35596541-35596804 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 169 |
| Conread position: | 60-480 |
| Cow position: | chr21:2541241-2540818 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 179 |
| Conread position: | 66-391 |
| Cow position: | chr21:445275-445584 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 216 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 8, 64 |
| Conread position: | 68-389 |
| Cow position: | chr21:26823053-26822731 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 212 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 13, 148 |
| Conread position: | 72-361 |
| Cow position: | chr21:21926522-21926227 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 203, 96 |
| Conread position: | 72-414 |
| Cow position: | chr21:21914471-21914815 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 235 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 45, 55 |
| Conread position: | 74-362 |
| Cow position: | chr21:6699388-6699107 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 99, 12 |
| Conread position: | 74-390 |
| Cow position: | chr21:36714817-36715131 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 222 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 101, 154 |
| Conread position: | 86-347 |
| Cow position: | chr21:35143968-35144217 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 185 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 231, 110 |
| Conread position: | 89-347 |
| Cow position: | chr21:27282599-27282847 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 223, 56 |
| Conread position: | 90-359 |
| Cow position: | chr21:23601398-23601660 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 187, 128 |
| Conread position: | 104-291 |
| Cow position: | chr21:216507-216694 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 127, 67 |
| Conread position: | 125-478 |
| Cow position: | chr21:30226258-30226601 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 0 |
| Conread position: | 131-324 |
| Cow position: | chr21:34258745-34258551 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 138-310 |
| Cow position: | chr21:33251757-33251929 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 15, 81 |
| Conread position: | 143-325 |
| Cow position: | chr21:3615569-3615750 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 145 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 148-392 |
| Cow position: | chr21:21517387-21517632 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 10, 108 |
| Conread position: | 164-479 |
| Cow position: | chr21:9870024-9870329 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 0 |
| Conread position: | 179-346 |
| Cow position: | chr21:2716425-2716257 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 163, 0 |
| Conread position: | 222-473 |
| Cow position: | chr21:29105-29356 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.