Cow genome map

Conread name: Ss1.1-Emb1-C0005182_F21.5

Conread position: 2-324
Cow position: chr22:525753-525428 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 43

Conread position: 2-324
Cow position: chr22:42771402-42771720 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 39

Conread position: 2-347
Cow position: chr22:36533812-36533452 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 2-379
Cow position: chr22:13675232-13674852 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 256
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 62, 25

Conread position: 3-317
Cow position: chr22:16200414-16200733 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 24

Conread position: 3-324
Cow position: chr22:5933056-5932735 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 68

Conread position: 3-389
Cow position: chr22:15956767-15956380 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 277
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 28, 109

Conread position: 4-325
Cow position: chr22:537049-537371 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 32

Conread position: 7-338
Cow position: chr22:44475188-44475513 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 234
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 24, 224

Conread position: 7-480
Cow position: chr22:1270578-1270129 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 86

Conread position: 11-317
Cow position: chr22:20240886-20240583 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 25

Conread position: 11-323
Cow position: chr22:44369683-44369360 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 218

Conread position: 11-325
Cow position: chr22:27309818-27309503 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 25

Conread position: 39-324
Cow position: chr22:157924-157641 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 73

Conread position: 44-280
Cow position: chr22:8740900-8740686 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 177
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 54, 0

Conread position: 44-385
Cow position: chr22:117862-117514 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 317

Conread position: 45-347
Cow position: chr22:5672724-5673027 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 13

Conread position: 51-407
Cow position: chr22:9273429-9273785 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 237
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 119, 64

Conread position: 52-235
Cow position: chr22:24949822-24950006 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 143
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 22, 0

Conread position: 52-244
Cow position: chr22:37073221-37073028 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 152
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 22, 84

Conread position: 52-281
Cow position: chr22:46635714-46635492 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 174
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 23, 36

Conread position: 52-303
Cow position: chr22:693618-693870 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 52-304
Cow position: chr22:21589316-21589569 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 52-304
Cow position: chr22:36183751-36184001 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 0

Conread position: 52-306
Cow position: chr22:37131638-37131880 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 66

Conread position: 52-309
Cow position: chr22:1319389-1319647 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 52-317
Cow position: chr22:327167-326911 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 201
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 22, 112

Conread position: 52-317
Cow position: chr22:27284036-27284290 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 78

Conread position: 52-317
Cow position: chr22:46581593-46581329 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 98

Conread position: 52-318
Cow position: chr22:5233313-5233046 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 52-324
Cow position: chr22:5308094-5308369 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 149

Conread position: 52-324
Cow position: chr22:15851322-15851584 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 117

Conread position: 52-325
Cow position: chr22:1878784-1879063 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 0

Conread position: 52-325
Cow position: chr22:6020654-6020932 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 52-325
Cow position: chr22:35672363-35672086 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 27

Conread position: 52-325
Cow position: chr22:44489879-44490155 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 52-326
Cow position: chr22:10546637-10546915 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 52-346
Cow position: chr22:44352965-44352680 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 135

Conread position: 52-350
Cow position: chr22:34168324-34168622 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 225

Conread position: 52-360
Cow position: chr22:298343-298042 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 208
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 32, 78

Conread position: 52-362
Cow position: chr22:8874981-8875288 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 205
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 22, 166

Conread position: 52-379
Cow position: chr22:1048401-1048721 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 55

Conread position: 52-394
Cow position: chr22:1321599-1321921 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 89

Conread position: 52-405
Cow position: chr22:7277514-7277863 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 8

Conread position: 52-412
Cow position: chr22:34598662-34599010 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 41

Conread position: 52-433
Cow position: chr22:11030952-11031335 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 52-435
Cow position: chr22:6503684-6503301 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 45

Conread position: 52-476
Cow position: chr22:41419702-41419286 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 317

Conread position: 52-480
Cow position: chr22:3306743-3306311 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 55

Conread position: 52-480
Cow position: chr22:8136207-8135786 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 16

Conread position: 52-480
Cow position: chr22:44609590-44609999 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 24

Conread position: 53-253
Cow position: chr22:36274803-36275003 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 148
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 112, 186

Conread position: 53-309
Cow position: chr22:10909840-10909583 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 67

Conread position: 53-317
Cow position: chr22:3278361-3278097 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 201

Conread position: 53-391
Cow position: chr22:309771-310105 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 195

Conread position: 54-248
Cow position: chr22:27386437-27386244 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 142
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 20, 179

Conread position: 54-288
Cow position: chr22:560711-560476 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 130

Conread position: 54-288
Cow position: chr22:31313335-31313570 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 54-288
Cow position: chr22:44396445-44396679 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 115

Conread position: 54-297
Cow position: chr22:42991166-42991410 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 54-309
Cow position: chr22:31335039-31334788 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 96

Conread position: 54-309
Cow position: chr22:39469529-39469273 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 54-309
Cow position: chr22:44933974-44934229 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 11

Conread position: 54-323
Cow position: chr22:17328745-17328475 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 253

Conread position: 54-347
Cow position: chr22:18816391-18816098 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 237

Conread position: 54-347
Cow position: chr22:19143705-19143411 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 257

Conread position: 54-347
Cow position: chr22:36861536-36861242 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 257

Conread position: 55-309
Cow position: chr22:15313962-15313702 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 56-480
Cow position: chr22:13917500-13917925 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 36

Conread position: 60-181
Cow position: chr22:1860811-1860689 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 97
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 14, 110

Conread position: 60-273
Cow position: chr22:32485352-32485139 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 167
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 14, 166

Conread position: 60-324
Cow position: chr22:36736763-36737024 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 77

Conread position: 60-324
Cow position: chr22:39882176-39881911 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 60-324
Cow position: chr22:46547664-46547399 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 63-324
Cow position: chr22:46853346-46853607 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 143

Conread position: 68-274
Cow position: chr22:11782520-11782317 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 146
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 7, 173

Conread position: 68-322
Cow position: chr22:870858-870603 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 176
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 6, 0

Conread position: 69-359
Cow position: chr22:36581168-36580886 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 190
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 13, 49

Conread position: 72-321
Cow position: chr22:35943193-35942948 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 174
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 155, 0

Conread position: 72-322
Cow position: chr22:41238186-41238434 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 173
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 86, 180

Conread position: 79-480
Cow position: chr22:1283629-1283236 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 252, 10

Conread position: 80-341
Cow position: chr22:32347957-32347708 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 177
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 17, 0

Conread position: 90-318
Cow position: chr22:18027311-18027538 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 0

Conread position: 99-231
Cow position: chr22:31936660-31936528 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 102
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 111-475
Cow position: chr22:23853383-23853746 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 58

Conread position: 115-324
Cow position: chr22:38938027-38937818 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 163
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 124-288
Cow position: chr22:45879545-45879380 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 136
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 112, 0

Conread position: 150-265
Cow position: chr22:48004350-48004462 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 93
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 18, 0

Conread position: 168-325
Cow position: chr22:37266082-37266241 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 124
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 143, 0

Conread position: 168-347
Cow position: chr22:1860848-1861028 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 136
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 143, 175

Conread position: 171-323
Cow position: chr22:16813998-16814152 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 123
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 140, 0

Conread position: 218-324
Cow position: chr22:13773055-13773159 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 89
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 53, 0

Conread position: 224-323
Cow position: chr22:24950261-24950362 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 87
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 89, 0

Conread position: 296-477
Cow position: chr22:35907482-35907309 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 139
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 13, 106

Conread position: 323-433
Cow position: chr22:37132147-37132257 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 89
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 323-480
Cow position: chr22:46547834-46547991 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 127
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.