Cow genome map
| Conread name: | Ss1.1-Emb1-C0005182_F21.5 |
| Conread position: | 2-282 |
| Cow position: | chr23:2524270-2523974 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 2-324 |
| Cow position: | chr23:4510026-4510342 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 233 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 26, 82 |
| Conread position: | 2-416 |
| Cow position: | chr23:4751929-4752344 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 279 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 16, 57 |
| Conread position: | 3-264 |
| Cow position: | chr23:3013574-3013851 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 3-430 |
| Cow position: | chr23:1327532-1327102 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 87 |
| Conread position: | 7-345 |
| Cow position: | chr23:7273579-7273918 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 139 |
| Conread position: | 7-347 |
| Cow position: | chr23:28913344-28913681 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 205 |
| Conread position: | 11-317 |
| Cow position: | chr23:4359785-4360089 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 25 |
| Conread position: | 11-317 |
| Cow position: | chr23:14974606-14974305 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 21 |
| Conread position: | 11-344 |
| Cow position: | chr23:19950628-19950295 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 25 |
| Conread position: | 14-317 |
| Cow position: | chr23:16616891-16616587 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 22 |
| Conread position: | 36-324 |
| Cow position: | chr23:31591825-31591537 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 22 |
| Conread position: | 44-360 |
| Cow position: | chr23:8980326-8980022 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 229 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 22, 51 |
| Conread position: | 52-260 |
| Cow position: | chr23:1025069-1024863 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 22, 32 |
| Conread position: | 52-286 |
| Cow position: | chr23:2795573-2795340 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 216 |
| Conread position: | 52-286 |
| Cow position: | chr23:22147258-22147023 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 52-304 |
| Cow position: | chr23:2027127-2026874 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 52-304 |
| Cow position: | chr23:15525602-15525855 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 52-309 |
| Cow position: | chr23:967353-967100 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 104 |
| Conread position: | 52-317 |
| Cow position: | chr23:20302207-20302471 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 259, 24 |
| Conread position: | 52-317 |
| Cow position: | chr23:28217282-28217549 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 52-323 |
| Cow position: | chr23:31446807-31447081 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 52-324 |
| Cow position: | chr23:15219900-15219626 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 52-344 |
| Cow position: | chr23:15177067-15177358 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 83 |
| Conread position: | 52-345 |
| Cow position: | chr23:2313245-2312948 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 259, 131 |
| Conread position: | 52-345 |
| Cow position: | chr23:4434452-4434743 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 54 |
| Conread position: | 52-349 |
| Cow position: | chr23:5779094-5778797 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 8 |
| Conread position: | 52-351 |
| Cow position: | chr23:10903520-10903828 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 206 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 22, 299 |
| Conread position: | 52-394 |
| Cow position: | chr23:19332415-19332077 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 233 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 21, 141 |
| Conread position: | 52-480 |
| Cow position: | chr23:29474565-29474138 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 128 |
| Conread position: | 53-282 |
| Cow position: | chr23:5874781-5874559 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 178 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 21, 137 |
| Conread position: | 53-301 |
| Cow position: | chr23:20156224-20155973 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 53-309 |
| Cow position: | chr23:2716383-2716638 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 188 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 27, 65 |
| Conread position: | 54-235 |
| Cow position: | chr23:4816067-4816251 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 54-288 |
| Cow position: | chr23:30636307-30636072 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 95 |
| Conread position: | 54-309 |
| Cow position: | chr23:4888669-4888923 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 121 |
| Conread position: | 54-309 |
| Cow position: | chr23:19489536-19489792 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 54-311 |
| Cow position: | chr23:36031379-36031121 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 54-324 |
| Cow position: | chr23:2574530-2574800 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 180 |
| Conread position: | 54-328 |
| Cow position: | chr23:27399498-27399771 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 184 |
| Conread position: | 54-347 |
| Cow position: | chr23:2757588-2757882 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 255 |
| Conread position: | 54-347 |
| Cow position: | chr23:3881706-3881417 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 263, 30 |
| Conread position: | 54-347 |
| Cow position: | chr23:11778466-11778776 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 228 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 21, 64 |
| Conread position: | 57-347 |
| Cow position: | chr23:4640627-4640336 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 254 |
| Conread position: | 60-288 |
| Cow position: | chr23:31595236-31595007 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 173 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 60-321 |
| Cow position: | chr23:6216573-6216833 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 14, 30 |
| Conread position: | 60-324 |
| Cow position: | chr23:988641-988383 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 194 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 14, 56 |
| Conread position: | 60-324 |
| Cow position: | chr23:4276955-4277220 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 62-347 |
| Cow position: | chr23:14965748-14965464 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 56 |
| Conread position: | 66-324 |
| Cow position: | chr23:25684055-25683799 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 152 |
| Conread position: | 70-406 |
| Cow position: | chr23:16615983-16615651 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 13 |
| Conread position: | 72-322 |
| Cow position: | chr23:26836292-26836536 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 72-379 |
| Cow position: | chr23:7047048-7046733 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 66, 140 |
| Conread position: | 72-414 |
| Cow position: | chr23:38578287-38578631 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 183 |
| Conread position: | 74-216 |
| Cow position: | chr23:19450271-19450412 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 80-282 |
| Cow position: | chr23:2782410-2782213 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 78, 28 |
| Conread position: | 97-324 |
| Cow position: | chr23:29452281-29452053 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 180 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 8, 12 |
| Conread position: | 109-324 |
| Cow position: | chr23:2765403-2765188 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 109-414 |
| Cow position: | chr23:22875623-22875330 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 239, 59 |
| Conread position: | 179-414 |
| Cow position: | chr23:31650790-31650559 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 113, 54 |
| Conread position: | 205-474 |
| Cow position: | chr23:1402736-1402471 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 50 |
Show alignments to all cow chromosomes.