Cow genome map
| Conread name: | Ss1.1-Emb1-C0005182_F21.5 |
| Conread position: | 1-264 |
| Cow position: | chr24:13524132-13524395 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 57 |
| Conread position: | 2-288 |
| Cow position: | chr24:15392296-15392025 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 43 |
| Conread position: | 2-347 |
| Cow position: | chr24:14585106-14585455 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 111 |
| Conread position: | 2-480 |
| Cow position: | chr24:16649287-16648814 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 40 |
| Conread position: | 3-348 |
| Cow position: | chr24:9092259-9091908 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 153 |
| Conread position: | 3-349 |
| Cow position: | chr24:12114027-12113665 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 249 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 28, 226 |
| Conread position: | 3-360 |
| Cow position: | chr24:40548892-40549268 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 4-480 |
| Cow position: | chr24:36560068-36559589 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 134 |
| Conread position: | 7-341 |
| Cow position: | chr24:6335713-6336048 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 180 |
| Conread position: | 11-285 |
| Cow position: | chr24:44017587-44017858 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 25 |
| Conread position: | 52-166 |
| Cow position: | chr24:14390657-14390542 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 52-188 |
| Cow position: | chr24:38635832-38635969 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 52-203 |
| Cow position: | chr24:39678487-39678640 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 52-220 |
| Cow position: | chr24:12131408-12131239 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 52-233 |
| Cow position: | chr24:12161956-12162134 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 22, 9 |
| Conread position: | 52-285 |
| Cow position: | chr24:14885177-14884942 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 117, 65 |
| Conread position: | 52-286 |
| Cow position: | chr24:1438105-1437875 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 52-304 |
| Cow position: | chr24:33933444-33933697 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 52-309 |
| Cow position: | chr24:148541-148283 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 52-309 |
| Cow position: | chr24:12485239-12484981 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 52-317 |
| Cow position: | chr24:6025017-6024753 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 123 |
| Conread position: | 52-317 |
| Cow position: | chr24:13188263-13188518 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 22, 135 |
| Conread position: | 52-317 |
| Cow position: | chr24:33739258-33738995 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 259, 159 |
| Conread position: | 52-318 |
| Cow position: | chr24:6084095-6084362 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 52-323 |
| Cow position: | chr24:6434319-6434592 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 73 |
| Conread position: | 52-323 |
| Cow position: | chr24:8030229-8030501 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 52-324 |
| Cow position: | chr24:12086276-12086549 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 52-325 |
| Cow position: | chr24:6660530-6660246 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 205 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 52-325 |
| Cow position: | chr24:16084582-16084303 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 52-345 |
| Cow position: | chr24:35838538-35838244 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 165 |
| Conread position: | 52-346 |
| Cow position: | chr24:14384535-14384242 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 9 |
| Conread position: | 52-347 |
| Cow position: | chr24:4415451-4415157 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 97 |
| Conread position: | 52-378 |
| Cow position: | chr24:6352255-6352584 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 221 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 24, 208 |
| Conread position: | 52-395 |
| Cow position: | chr24:40654464-40654798 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 22, 118 |
| Conread position: | 52-407 |
| Cow position: | chr24:7091517-7091165 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 32 |
| Conread position: | 52-414 |
| Cow position: | chr24:17303533-17303178 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 244 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 114, 44 |
| Conread position: | 52-421 |
| Cow position: | chr24:35841545-35841174 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 153 |
| Conread position: | 52-480 |
| Cow position: | chr24:12797690-12797265 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 252 |
| Conread position: | 53-317 |
| Cow position: | chr24:22793252-22793517 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 77 |
| Conread position: | 53-322 |
| Cow position: | chr24:37217084-37217348 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 72 |
| Conread position: | 53-360 |
| Cow position: | chr24:9188652-9188336 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 112 |
| Conread position: | 54-264 |
| Cow position: | chr24:22952216-22952427 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 54-309 |
| Cow position: | chr24:17696893-17696642 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 154 |
| Conread position: | 54-309 |
| Cow position: | chr24:19833461-19833721 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 54-309 |
| Cow position: | chr24:29187363-29187619 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 142 |
| Conread position: | 57-347 |
| Cow position: | chr24:12335691-12335401 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 220 |
| Conread position: | 60-320 |
| Cow position: | chr24:12237140-12237400 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 241 |
| Conread position: | 61-324 |
| Cow position: | chr24:6145456-6145719 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 108 |
| Conread position: | 62-387 |
| Cow position: | chr24:12288307-12287982 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 236 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 12, 145 |
| Conread position: | 66-393 |
| Cow position: | chr24:6537632-6537951 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 8, 28 |
| Conread position: | 72-276 |
| Cow position: | chr24:14873254-14873047 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 45, 158 |
| Conread position: | 74-421 |
| Cow position: | chr24:36707948-36708288 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 239, 94 |
| Conread position: | 82-319 |
| Cow position: | chr24:6510723-6510485 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 156 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 172, 0 |
| Conread position: | 84-422 |
| Cow position: | chr24:12568347-12568678 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 273, 22 |
| Conread position: | 99-304 |
| Cow position: | chr24:6645828-6646034 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 158 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 101-413 |
| Cow position: | chr24:1447684-1447996 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 257, 118 |
| Conread position: | 129-318 |
| Cow position: | chr24:7061545-7061734 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 150 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 143-317 |
| Cow position: | chr24:5993059-5992884 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 168, 0 |
| Conread position: | 150-390 |
| Cow position: | chr24:16376701-16376934 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 188 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 7, 49 |
| Conread position: | 174-421 |
| Cow position: | chr24:14333244-14333491 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 178-325 |
| Cow position: | chr24:43813969-43814120 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 133, 0 |
| Conread position: | 178-406 |
| Cow position: | chr24:38636810-38637039 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 171 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 19, 12 |
| Conread position: | 214-345 |
| Cow position: | chr24:6444523-6444655 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 108, 54 |
| Conread position: | 300-414 |
| Cow position: | chr24:38005043-38004928 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 337-480 |
| Cow position: | chr24:12206273-12206132 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 108, 0 |
Show alignments to all cow chromosomes.