Cow genome map
| Conread name: | Ss1.1-Emb1-C0005182_F21.5 |
| Conread position: | 2-300 |
| Cow position: | chr29:17662861-17663155 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 187 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 80, 34 |
| Conread position: | 2-324 |
| Cow position: | chr29:21543427-21543094 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 152 |
| Conread position: | 3-286 |
| Cow position: | chr29:6266555-6266264 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 204 |
| Conread position: | 3-288 |
| Cow position: | chr29:45587407-45587121 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 133 |
| Conread position: | 3-304 |
| Cow position: | chr29:10824017-10823714 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 3-347 |
| Cow position: | chr29:16770067-16770421 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 327 |
| Conread position: | 3-480 |
| Cow position: | chr29:5983243-5982780 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 116 |
| Conread position: | 11-325 |
| Cow position: | chr29:610647-610332 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 25 |
| Conread position: | 14-309 |
| Cow position: | chr29:7840765-7841056 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 22 |
| Conread position: | 27-361 |
| Cow position: | chr29:16017174-16016843 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 43, 174 |
| Conread position: | 51-249 |
| Cow position: | chr29:32316042-32316241 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 155 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 52-211 |
| Cow position: | chr29:13853021-13852863 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 22, 117 |
| Conread position: | 52-288 |
| Cow position: | chr29:42650287-42650525 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 85 |
| Conread position: | 52-288 |
| Cow position: | chr29:42802147-42802385 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 85 |
| Conread position: | 52-303 |
| Cow position: | chr29:5957605-5957858 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 52-309 |
| Cow position: | chr29:26164820-26164562 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 52-310 |
| Cow position: | chr29:15894848-15894589 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 52-317 |
| Cow position: | chr29:670054-669788 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 97 |
| Conread position: | 52-317 |
| Cow position: | chr29:13582074-13582337 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 124 |
| Conread position: | 52-317 |
| Cow position: | chr29:18856942-18856675 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 52-317 |
| Cow position: | chr29:35296876-35297143 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 98 |
| Conread position: | 52-318 |
| Cow position: | chr29:2841365-2841105 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 66 |
| Conread position: | 52-323 |
| Cow position: | chr29:27250332-27250066 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 102 |
| Conread position: | 52-324 |
| Cow position: | chr29:2466334-2466059 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 52-324 |
| Cow position: | chr29:35196670-35196939 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 8 |
| Conread position: | 52-326 |
| Cow position: | chr29:19885072-19885351 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 52-335 |
| Cow position: | chr29:2750409-2750135 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 56 |
| Conread position: | 52-336 |
| Cow position: | chr29:25932542-25932258 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 259 |
| Conread position: | 52-347 |
| Cow position: | chr29:2689904-2690198 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 143 |
| Conread position: | 52-347 |
| Cow position: | chr29:16022532-16022828 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 259 |
| Conread position: | 52-353 |
| Cow position: | chr29:9643756-9643453 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 78 |
| Conread position: | 52-386 |
| Cow position: | chr29:30811534-30811859 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 66 |
| Conread position: | 52-402 |
| Cow position: | chr29:104569-104913 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 237 |
| Conread position: | 52-414 |
| Cow position: | chr29:803350-802986 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 261 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 33, 97 |
| Conread position: | 52-421 |
| Cow position: | chr29:1715246-1715613 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 68 |
| Conread position: | 53-204 |
| Cow position: | chr29:15969147-15968996 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 21, 110 |
| Conread position: | 53-288 |
| Cow position: | chr29:10848105-10847853 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 53-309 |
| Cow position: | chr29:27980914-27980659 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 221 |
| Conread position: | 54-246 |
| Cow position: | chr29:12796361-12796168 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 54-288 |
| Cow position: | chr29:40502976-40502743 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 174 |
| Conread position: | 54-303 |
| Cow position: | chr29:7431211-7430965 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 174 |
| Conread position: | 54-304 |
| Cow position: | chr29:14585932-14586177 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 51 |
| Conread position: | 54-304 |
| Cow position: | chr29:19623243-19622992 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 54-304 |
| Cow position: | chr29:19653109-19653363 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 54-304 |
| Cow position: | chr29:38226988-38227235 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 60 |
| Conread position: | 54-309 |
| Cow position: | chr29:48474-48220 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 194 |
| Conread position: | 54-309 |
| Cow position: | chr29:20251164-20251419 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 148 |
| Conread position: | 54-309 |
| Cow position: | chr29:32539815-32540070 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 81 |
| Conread position: | 54-309 |
| Cow position: | chr29:39079708-39079452 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 54-322 |
| Cow position: | chr29:10844249-10844513 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 29, 138 |
| Conread position: | 54-324 |
| Cow position: | chr29:34799805-34799530 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 54-328 |
| Cow position: | chr29:45459719-45459994 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 93 |
| Conread position: | 54-347 |
| Cow position: | chr29:410521-410227 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 54-347 |
| Cow position: | chr29:10648247-10647953 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 257 |
| Conread position: | 54-347 |
| Cow position: | chr29:23975844-23976138 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 257 |
| Conread position: | 54-347 |
| Cow position: | chr29:43322564-43322852 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 139 |
| Conread position: | 55-347 |
| Cow position: | chr29:2099850-2100143 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 256 |
| Conread position: | 57-421 |
| Cow position: | chr29:15950184-15949821 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 254 |
| Conread position: | 58-321 |
| Cow position: | chr29:8062892-8062622 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 17, 163 |
| Conread position: | 60-324 |
| Cow position: | chr29:11049289-11049553 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 94 |
| Conread position: | 60-324 |
| Cow position: | chr29:27040754-27040497 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 77 |
| Conread position: | 60-324 |
| Cow position: | chr29:43365989-43365727 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 203 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 15, 92 |
| Conread position: | 61-209 |
| Cow position: | chr29:16109738-16109887 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 69-326 |
| Cow position: | chr29:4056169-4056427 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 162, 0 |
| Conread position: | 80-323 |
| Cow position: | chr29:34925505-34925755 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 89-392 |
| Cow position: | chr29:19893811-19894114 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 203 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 82, 40 |
| Conread position: | 91-323 |
| Cow position: | chr29:13669247-13669021 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 131, 81 |
| Conread position: | 123-317 |
| Cow position: | chr29:31181490-31181684 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 188, 25 |
| Conread position: | 134-324 |
| Cow position: | chr29:21426939-21426755 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 141-415 |
| Cow position: | chr29:24709156-24708884 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 190 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 96, 30 |
| Conread position: | 168-407 |
| Cow position: | chr29:19906753-19906987 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 181, 142 |
| Conread position: | 184-476 |
| Cow position: | chr29:14086313-14086027 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 42 |
| Conread position: | 193-309 |
| Cow position: | chr29:15968717-15968601 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 245-450 |
| Cow position: | chr29:8331136-8330938 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 247-421 |
| Cow position: | chr29:13648882-13649052 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 119, 74 |
| Conread position: | 334-480 |
| Cow position: | chr29:2749931-2749790 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 21, 112 |
Show alignments to all cow chromosomes.