Cow genome map
| Conread name: | Ss1.1-Emb1-C0005193_I07.5 |
| Conread position: | 78-414 |
| Cow position: | chr22:11640849-11641187 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 235, 242 |
| Conread position: | 93-408 |
| Cow position: | chr22:12499632-12499949 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 244, 0 |
| Conread position: | 93-414 |
| Cow position: | chr22:11641032-11641355 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 244, 0 |
| Conread position: | 93-454 |
| Cow position: | chr22:12418853-12418489 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 229 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 241, 0 |
| Conread position: | 94-333 |
| Cow position: | chr22:12418684-12418445 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 94-366 |
| Cow position: | chr22:12498961-12499235 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 36, 51 |
| Conread position: | 112-376 |
| Cow position: | chr22:12476280-12476014 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 18, 33 |
| Conread position: | 112-386 |
| Cow position: | chr22:11640967-11641243 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 174 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 101, 106 |
| Conread position: | 145-302 |
| Cow position: | chr22:12419238-12419081 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 145-447 |
| Cow position: | chr22:12419322-12419018 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 195, 0 |
| Conread position: | 146-375 |
| Cow position: | chr22:12431260-12431030 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 191, 5 |
| Conread position: | 146-376 |
| Cow position: | chr22:11701412-11701644 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 156, 174 |
| Conread position: | 148-376 |
| Cow position: | chr22:12432435-12432205 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 189, 0 |
| Conread position: | 149-376 |
| Cow position: | chr22:11666677-11666906 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 157 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 53, 83 |
| Conread position: | 149-402 |
| Cow position: | chr22:11641172-11641427 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 166, 171 |
| Conread position: | 149-402 |
| Cow position: | chr22:12399362-12399107 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 193, 0 |
| Conread position: | 149-414 |
| Cow position: | chr22:11640836-11641103 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 180 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 188, 233 |
| Conread position: | 149-414 |
| Cow position: | chr22:11701331-11701598 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 179 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 188, 248 |
| Conread position: | 149-414 |
| Cow position: | chr22:12399698-12399431 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 188, 0 |
| Conread position: | 149-431 |
| Cow position: | chr22:11640668-11640952 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 189 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 85, 80 |
| Conread position: | 150-375 |
| Cow position: | chr22:11640753-11640980 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 187, 0 |
| Conread position: | 150-376 |
| Cow position: | chr22:12418880-12418652 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 186, 204 |
| Conread position: | 150-404 |
| Cow position: | chr22:12418712-12418456 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 187, 0 |
| Conread position: | 150-414 |
| Cow position: | chr22:11701164-11701430 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 170, 155 |
| Conread position: | 150-451 |
| Cow position: | chr22:12476326-12476022 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 184, 0 |
| Conread position: | 151-375 |
| Cow position: | chr22:12458544-12458318 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 185, 0 |
| Conread position: | 151-402 |
| Cow position: | chr22:12458460-12458207 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 186, 0 |
| Conread position: | 151-414 |
| Cow position: | chr22:12475905-12475640 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 169, 164 |
| Conread position: | 151-414 |
| Cow position: | chr22:12499354-12499619 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 81, 69 |
| Conread position: | 151-415 |
| Cow position: | chr22:12475569-12475303 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 88, 73 |
| Conread position: | 151-423 |
| Cow position: | chr22:12418963-12418689 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 158, 147 |
| Conread position: | 151-453 |
| Cow position: | chr22:12498934-12499239 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 186, 0 |
| Conread position: | 152-434 |
| Cow position: | chr22:12458627-12458343 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 84, 79 |
| Conread position: | 154-335 |
| Cow position: | chr22:12544564-12544745 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 180-414 |
| Cow position: | chr22:12419018-12418782 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 157, 202 |
Show alignments to all cow chromosomes.