Cow genome map

Conread name: Ss1.1-Emb1-C0005193_I07.5

Conread position: 41-386
Cow position: chr25:3663968-3664315 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 221
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 35, 48

Conread position: 90-402
Cow position: chr25:25652946-25653260 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 208
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 249, 0

Conread position: 90-408
Cow position: chr25:33506834-33507154 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 207
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 133, 138

Conread position: 90-424
Cow position: chr25:4657379-4657043 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 221
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 52, 59

Conread position: 92-378
Cow position: chr25:3636306-3636018 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 187
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 247, 0

Conread position: 93-294
Cow position: chr25:25653117-25653318 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 136
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 93-341
Cow position: chr25:33145187-33145435 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 157
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 93-366
Cow position: chr25:326586-326861 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 176
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 245, 0

Conread position: 93-375
Cow position: chr25:3664272-3664556 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 186
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 242, 0

Conread position: 93-376
Cow position: chr25:34769867-34769582 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 181
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 219, 226

Conread position: 93-393
Cow position: chr25:33530486-33530788 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 193
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 246, 291

Conread position: 93-404
Cow position: chr25:34769615-34769302 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 198
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 227, 212

Conread position: 93-408
Cow position: chr25:3664188-3664505 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 213
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 243, 0

Conread position: 93-414
Cow position: chr25:25652529-25652852 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 214
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 246, 0

Conread position: 93-431
Cow position: chr25:25652361-25652701 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 246, 0

Conread position: 93-431
Cow position: chr25:25652697-25653037 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 222
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 135, 129

Conread position: 93-443
Cow position: chr25:3676081-3676432 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 224
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 14, 20

Conread position: 93-448
Cow position: chr25:3675997-3676355 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 230
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 11, 7

Conread position: 94-414
Cow position: chr25:33157299-33156977 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 142

Conread position: 101-347
Cow position: chr25:3663944-3664192 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 172
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 6, 12

Conread position: 101-404
Cow position: chr25:34770111-34769806 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 198
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 210, 203

Conread position: 108-347
Cow position: chr25:34762849-34763090 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 166
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 162, 177

Conread position: 111-379
Cow position: chr25:33529205-33529475 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 181
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 228, 0

Conread position: 112-379
Cow position: chr25:33506772-33507041 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 179
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 204, 208

Conread position: 112-379
Cow position: chr25:34763186-34763455 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 181
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 223, 0

Conread position: 112-408
Cow position: chr25:25652212-25652510 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 205
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 227, 0

Conread position: 112-409
Cow position: chr25:33529122-33529422 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 190
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 225, 0

Conread position: 112-414
Cow position: chr25:33157449-33157145 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 227, 0

Conread position: 116-334
Cow position: chr25:34763523-34763741 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 151
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 120-403
Cow position: chr25:3664131-3664416 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 194
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 27, 20

Conread position: 120-404
Cow position: chr25:25652304-25652590 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 0

Conread position: 122-408
Cow position: chr25:33530263-33530551 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 186
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 113, 107

Conread position: 135-322
Cow position: chr25:24398607-24398420 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 130
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 89, 95

Conread position: 146-409
Cow position: chr25:34473649-34473911 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 171
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 37, 21

Conread position: 148-341
Cow position: chr25:33128030-33128223 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 132
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 148-376
Cow position: chr25:33144909-33145136 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 159
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 197, 128

Conread position: 148-405
Cow position: chr25:4657405-4657146 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 171
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 191, 0

Conread position: 148-408
Cow position: chr25:25652668-25652930 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 185
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 187, 236

Conread position: 148-408
Cow position: chr25:33529074-33529336 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 171
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 195, 0

Conread position: 149-333
Cow position: chr25:34733864-34733680 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 125
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 149-348
Cow position: chr25:33156992-33156791 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 138
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 188, 0

Conread position: 149-366
Cow position: chr25:34732463-34732244 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 150
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 160, 146

Conread position: 149-375
Cow position: chr25:34732547-34732319 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 156
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 82, 87

Conread position: 149-376
Cow position: chr25:34769979-34769750 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 160
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 74, 86

Conread position: 149-394
Cow position: chr25:33298876-33299121 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 164
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 75, 87

Conread position: 149-404
Cow position: chr25:34733948-34733691 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 178
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 187, 239

Conread position: 149-414
Cow position: chr25:33157328-33157061 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 195
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 166, 171

Conread position: 149-434
Cow position: chr25:34446999-34447286 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 187
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 77, 83

Conread position: 149-446
Cow position: chr25:34447083-34447383 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 0

Conread position: 150-376
Cow position: chr25:33299129-33299357 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 150
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 191, 0

Conread position: 150-406
Cow position: chr25:34763392-34763647 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 175
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 76, 62

Conread position: 150-408
Cow position: chr25:25652922-25653182 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 184
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 189, 0

Conread position: 150-408
Cow position: chr25:33530459-33530719 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 176
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 189, 234

Conread position: 150-414
Cow position: chr25:33127864-33128130 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 184
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 192, 0

Conread position: 150-431
Cow position: chr25:33127948-33128231 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 190
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 159, 150

Conread position: 151-347
Cow position: chr25:33299046-33299244 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 139
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 79, 61

Conread position: 151-366
Cow position: chr25:326560-326777 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 150
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 192, 0

Conread position: 151-375
Cow position: chr25:34769893-34769667 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 160
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 191, 0

Conread position: 151-376
Cow position: chr25:25653091-25653318 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 167
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 188, 0

Conread position: 151-376
Cow position: chr25:33298710-33298937 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 150
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 163, 169

Conread position: 151-376
Cow position: chr25:33299466-33299693 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 147
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 183, 0

Conread position: 151-376
Cow position: chr25:36801522-36801749 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 149
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 188, 0

Conread position: 151-379
Cow position: chr25:33298794-33299024 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 150
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 186, 0

Conread position: 151-379
Cow position: chr25:34473570-34473800 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 154
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 186, 0

Conread position: 151-386
Cow position: chr25:34769641-34769404 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 164
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 73, 85

Conread position: 151-391
Cow position: chr25:36800946-36801186 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 166
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 73, 85

Conread position: 151-402
Cow position: chr25:33127781-33128034 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 177
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 186, 0

Conread position: 151-402
Cow position: chr25:33157158-33156905 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 180
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 164, 169

Conread position: 151-402
Cow position: chr25:34763141-34763394 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 170
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 185, 0

Conread position: 151-409
Cow position: chr25:34763060-34763317 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 175
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 185, 61

Conread position: 151-414
Cow position: chr25:22235892-22236157 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 179
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 186, 0

Conread position: 151-414
Cow position: chr25:22236060-22236325 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 177
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 154, 169

Conread position: 151-414
Cow position: chr25:33157074-33156809 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 182
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 79, 84

Conread position: 151-414
Cow position: chr25:33157494-33157229 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 184
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 23, 14

Conread position: 151-430
Cow position: chr25:3636415-3636134 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 184
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 186, 0

Conread position: 151-431
Cow position: chr25:33298626-33298908 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 181
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 186, 268

Conread position: 151-446
Cow position: chr25:34447253-34447551 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 195
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 84, 78

Conread position: 154-414
Cow position: chr25:36844638-36844376 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 168
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 174, 0

Conread position: 158-337
Cow position: chr25:3664421-3664600 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 128
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 155, 160

Conread position: 158-415
Cow position: chr25:24385010-24384751 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 168
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 162, 157

Conread position: 160-376
Cow position: chr25:33145170-33145388 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 148
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 72, 51

Conread position: 162-427
Cow position: chr25:427319-427586 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 168
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 175, 0

Conread position: 163-404
Cow position: chr25:34473834-34474074 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 164
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 174, 22

Conread position: 169-408
Cow position: chr25:23267254-23267013 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 161
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 106, 39

Conread position: 169-431
Cow position: chr25:34732611-34732347 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 175
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 144, 151

Conread position: 169-455
Cow position: chr25:34734012-34733724 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 192
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 168, 284

Conread position: 172-379
Cow position: chr25:3675992-3676201 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 141
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 168, 0

Conread position: 172-397
Cow position: chr25:414696-414469 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 147
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 164, 0

Conread position: 172-408
Cow position: chr25:25652188-25652426 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 169
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 144, 148

Conread position: 173-408
Cow position: chr25:3663932-3664169 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 163
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 18, 22

Conread position: 174-386
Cow position: chr25:4657463-4657249 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 151
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 165, 0

Conread position: 174-404
Cow position: chr25:33298565-33298797 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 152
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 163, 0

Show alignments to all cow chromosomes.