Cow genome map


           Conread name:
           Ss1.1-Liv1-LVR010102H02.5.5
        

               Conread position:
               22-1600
               

               Cow position:
               chr1:8908500-8906980 (view UCSC Genome Browser custom track)
               

               Alignm length:
               1582
               

               Alignm identity:
               1169
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               320, 38
               

               Conread position:
               30-310
               

               Cow position:
               chr1:159423-159697 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               214
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 0
               

               Conread position:
               90-1488
               

               Cow position:
               chr1:53021996-53020645 (view UCSC Genome Browser custom track)
               

               Alignm length:
               1403
               

               Alignm identity:
               939
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               6, 118
               

               Conread position:
               295-474
               

               Cow position:
               chr1:159701-159879 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               144
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               59, 0
               

               Conread position:
               728-1058
               

               Cow position:
               chr1:160011-160324 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               181, 151
               

               Conread position:
               1067-1286
               

               Cow position:
               chr1:160479-160685 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               161
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               109, 43
               

               Conread position:
               1317-1637
               

               Cow position:
               chr1:160689-160994 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               289, 24
               

               Conread position:
               1634-1766
               

               Cow position:
               chr1:8906742-8906616 (view UCSC Genome Browser custom track)
               

               Alignm length:
               133
               

               Alignm identity:
               107
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               21, 0
               

               Conread position:
               1663-1769
               

               Cow position:
               chr1:161236-161343 (view UCSC Genome Browser custom track)
               

               Alignm length:
               108
               

               Alignm identity:
               94
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               89, 0
               

               Conread position:
               1702-1818
               

               Cow position:
               chr1:47480032-47479918 (view UCSC Genome Browser custom track)
               

               Alignm length:
               117
               

               Alignm identity:
               96
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               34, 0
               
Show alignments to all cow chromosomes.