Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01C120006.5 |
| Conread position: | 1-129 |
| Cow position: | chr10:183039-183169 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 104 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 289-599 |
| Cow position: | chr10:19715468-19715153 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 212 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 13, 116 |
| Conread position: | 289-634 |
| Cow position: | chr10:37060506-37060857 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 239 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 13, 206 |
| Conread position: | 289-642 |
| Cow position: | chr10:123894-124245 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 13, 175 |
| Conread position: | 289-642 |
| Cow position: | chr10:22100819-22101177 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 240 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 13, 57 |
| Conread position: | 289-642 |
| Cow position: | chr10:32650317-32650668 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 243 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 13, 175 |
| Conread position: | 289-642 |
| Cow position: | chr10:57990387-57990028 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 246 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 13, 205 |
| Conread position: | 289-684 |
| Cow position: | chr10:7283103-7282704 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 266 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 13, 48 |
| Conread position: | 289-756 |
| Cow position: | chr10:1375113-1375598 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 55 |
| Conread position: | 296-675 |
| Cow position: | chr10:57559964-57559576 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 251 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 26, 213 |
| Conread position: | 296-681 |
| Cow position: | chr10:51953019-51952627 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 257 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 26, 298 |
| Conread position: | 296-684 |
| Cow position: | chr10:281037-280638 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 265 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 296-684 |
| Cow position: | chr10:14803418-14803816 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 258 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 26, 318 |
| Conread position: | 296-684 |
| Cow position: | chr10:32577884-32578284 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 260 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 26, 321 |
| Conread position: | 296-684 |
| Cow position: | chr10:39179376-39179765 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 260 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 26, 165 |
| Conread position: | 296-684 |
| Cow position: | chr10:39817761-39817369 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 262 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 6, 20 |
| Conread position: | 296-684 |
| Cow position: | chr10:41157039-41157429 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 266 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 26, 191 |
| Conread position: | 296-684 |
| Cow position: | chr10:41876506-41876900 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 261 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 26, 92 |
| Conread position: | 296-712 |
| Cow position: | chr10:38345780-38345349 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 287 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 6, 199 |
| Conread position: | 300-684 |
| Cow position: | chr10:37769414-37769804 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 272 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 55, 36 |
| Conread position: | 301-628 |
| Cow position: | chr10:34318665-34318347 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 73, 36 |
| Conread position: | 301-642 |
| Cow position: | chr10:29847022-29846674 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 242 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 20, 194 |
| Conread position: | 301-642 |
| Cow position: | chr10:39041716-39041370 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 241 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 38, 192 |
| Conread position: | 301-712 |
| Cow position: | chr10:19143749-19143325 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 288 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 35, 192 |
| Conread position: | 301-712 |
| Cow position: | chr10:62409263-62408842 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 279 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 35, 160 |
| Conread position: | 312-642 |
| Cow position: | chr10:19511206-19511541 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 237 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 23, 183 |
| Conread position: | 312-684 |
| Cow position: | chr10:10581275-10581654 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 262 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 75, 9 |
| Conread position: | 313-517 |
| Cow position: | chr10:183144-183353 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 165 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 321-563 |
| Cow position: | chr10:21466865-21467112 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 321-666 |
| Cow position: | chr10:21382323-21382679 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 256 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 43, 208 |
| Conread position: | 321-683 |
| Cow position: | chr10:20396399-20396749 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 66, 159 |
| Conread position: | 321-684 |
| Cow position: | chr10:47906392-47906759 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 65, 104 |
| Conread position: | 321-684 |
| Cow position: | chr10:54059736-54059373 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 242 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 59, 35 |
| Conread position: | 321-727 |
| Cow position: | chr10:24299237-24298822 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 290 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 61, 38 |
| Conread position: | 321-750 |
| Cow position: | chr10:32063766-32064207 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 30 |
| Conread position: | 321-752 |
| Cow position: | chr10:60489281-60489717 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 297 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 58, 85 |
| Conread position: | 321-756 |
| Cow position: | chr10:4499327-4499750 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 307 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 58, 160 |
| Conread position: | 322-751 |
| Cow position: | chr10:41352142-41351697 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 316 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 57, 189 |
| Conread position: | 323-666 |
| Cow position: | chr10:54967520-54967183 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 232 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 71, 21 |
| Conread position: | 323-684 |
| Cow position: | chr10:21741136-21740770 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 241 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 64, 250 |
| Conread position: | 323-728 |
| Cow position: | chr10:14859597-14860009 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 278 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 56, 7 |
| Conread position: | 324-578 |
| Cow position: | chr10:58377947-58377700 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 72, 49 |
| Conread position: | 324-582 |
| Cow position: | chr10:14886228-14885975 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 181 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 113, 50 |
| Conread position: | 324-756 |
| Cow position: | chr10:42109347-42109788 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 70 |
| Conread position: | 324-756 |
| Cow position: | chr10:42747716-42748158 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 175 |
| Conread position: | 326-679 |
| Cow position: | chr10:58596126-58596475 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 47 |
| Conread position: | 328-756 |
| Cow position: | chr10:38846995-38847425 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 10 |
| Conread position: | 330-730 |
| Cow position: | chr10:21486535-21486949 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 279 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 56, 163 |
| Conread position: | 331-685 |
| Cow position: | chr10:55092731-55093093 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 55, 35 |
| Conread position: | 344-567 |
| Cow position: | chr10:15862657-15862437 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 38, 51 |
| Conread position: | 346-583 |
| Cow position: | chr10:29695882-29696118 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 31, 112 |
| Conread position: | 346-666 |
| Cow position: | chr10:25497990-25498313 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 230 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 31, 226 |
| Conread position: | 346-733 |
| Cow position: | chr10:34685535-34685933 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 264 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 110, 13 |
| Conread position: | 346-733 |
| Cow position: | chr10:62216242-62216645 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 281 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 31, 145 |
| Conread position: | 352-728 |
| Cow position: | chr10:29633206-29632829 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 255 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 25, 52 |
| Conread position: | 358-641 |
| Cow position: | chr10:25359050-25359334 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 21, 54 |
| Conread position: | 361-673 |
| Cow position: | chr10:38546567-38546254 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 214 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 91, 42 |
| Conread position: | 364-733 |
| Cow position: | chr10:62777995-62778385 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 261 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 12, 130 |
| Conread position: | 365-756 |
| Cow position: | chr10:10478476-10478087 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 259 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 12, 88 |
| Conread position: | 366-728 |
| Cow position: | chr10:24314163-24313798 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 265 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 24, 46 |
| Conread position: | 369-640 |
| Cow position: | chr10:49310200-49310469 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 74, 38 |
| Conread position: | 380-684 |
| Cow position: | chr10:61297005-61297308 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 213 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 76, 28 |
| Conread position: | 382-756 |
| Cow position: | chr10:21076036-21076430 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 204 |
| Conread position: | 385-751 |
| Cow position: | chr10:24978459-24978073 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 181 |
| Conread position: | 433-704 |
| Cow position: | chr10:64303253-64302963 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 23, 124 |
| Conread position: | 491-722 |
| Cow position: | chr10:20383759-20383517 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 9, 73 |
| Conread position: | 517-667 |
| Cow position: | chr10:6260954-6260802 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 28, 19 |
Show alignments to all cow chromosomes.