Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01C120006.5 |
| Conread position: | 1-111 |
| Cow position: | chr11:8293498-8293608 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 32, 92 |
| Conread position: | 1-123 |
| Cow position: | chr11:87171580-87171704 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 100 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-128 |
| Cow position: | chr11:48084473-48084602 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 1-129 |
| Cow position: | chr11:17925427-17925301 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 102 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 31, 70 |
| Conread position: | 18-129 |
| Cow position: | chr11:24242597-24242710 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 91 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 274-634 |
| Cow position: | chr11:35228797-35228456 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 35, 75 |
| Conread position: | 289-554 |
| Cow position: | chr11:53432555-53432283 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 13, 257 |
| Conread position: | 289-641 |
| Cow position: | chr11:71328860-71329218 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 13, 27 |
| Conread position: | 289-642 |
| Cow position: | chr11:23876518-23876879 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 251 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 13, 206 |
| Conread position: | 289-642 |
| Cow position: | chr11:24392541-24392899 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 47, 205 |
| Conread position: | 289-642 |
| Cow position: | chr11:72110745-72110387 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 240 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 13, 199 |
| Conread position: | 289-684 |
| Cow position: | chr11:43515419-43515011 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 270 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 13, 203 |
| Conread position: | 289-684 |
| Cow position: | chr11:67449709-67450117 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 270 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 13, 172 |
| Conread position: | 289-703 |
| Cow position: | chr11:85394595-85394167 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 206 |
| Conread position: | 289-730 |
| Cow position: | chr11:37093848-37093388 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 308 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 13, 206 |
| Conread position: | 289-730 |
| Cow position: | chr11:41171472-41171019 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 299 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 13, 88 |
| Conread position: | 289-752 |
| Cow position: | chr11:11987333-11987808 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 314 |
| Conread position: | 289-752 |
| Cow position: | chr11:12359205-12358724 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 323 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 13, 136 |
| Conread position: | 291-571 |
| Cow position: | chr11:12092975-12093264 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 36, 206 |
| Conread position: | 291-728 |
| Cow position: | chr11:44496366-44495926 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 297 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 53, 170 |
| Conread position: | 296-571 |
| Cow position: | chr11:9220788-9220508 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 84, 40 |
| Conread position: | 296-572 |
| Cow position: | chr11:76375243-76374966 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 84, 48 |
| Conread position: | 296-677 |
| Cow position: | chr11:3492236-3492623 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 259 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 26, 199 |
| Conread position: | 296-684 |
| Cow position: | chr11:20921525-20921126 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 27, 319 |
| Conread position: | 296-684 |
| Cow position: | chr11:32450089-32450487 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 261 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 26, 318 |
| Conread position: | 296-684 |
| Cow position: | chr11:52418614-52419007 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 254 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 27, 175 |
| Conread position: | 296-730 |
| Cow position: | chr11:4041841-4041398 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 294 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 20, 181 |
| Conread position: | 298-578 |
| Cow position: | chr11:24242671-24242953 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 146 |
| Conread position: | 301-684 |
| Cow position: | chr11:29669398-29669009 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 269 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 54, 35 |
| Conread position: | 301-712 |
| Cow position: | chr11:26125701-26125281 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 288 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 35, 192 |
| Conread position: | 301-728 |
| Cow position: | chr11:28062921-28063355 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 37 |
| Conread position: | 301-732 |
| Cow position: | chr11:33044886-33044445 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 308 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 33, 47 |
| Conread position: | 305-756 |
| Cow position: | chr11:42428568-42429040 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 33 |
| Conread position: | 309-756 |
| Cow position: | chr11:10218318-10217861 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 49 |
| Conread position: | 317-728 |
| Cow position: | chr11:28050512-28050118 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 290 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 70, 21 |
| Conread position: | 321-642 |
| Cow position: | chr11:58133606-58133943 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 238 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 67, 186 |
| Conread position: | 321-666 |
| Cow position: | chr11:30186352-30186691 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 233 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 20, 40 |
| Conread position: | 321-684 |
| Cow position: | chr11:28230494-28230129 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 247 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 65, 138 |
| Conread position: | 321-684 |
| Cow position: | chr11:36744929-36744561 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 246 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 65, 252 |
| Conread position: | 321-684 |
| Cow position: | chr11:37477867-37477500 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 254 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 65, 27 |
| Conread position: | 321-684 |
| Cow position: | chr11:67847317-67846949 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 251 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 66, 15 |
| Conread position: | 321-685 |
| Cow position: | chr11:53288193-53287835 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 242 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 65, 108 |
| Conread position: | 321-712 |
| Cow position: | chr11:19103238-19102835 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 275 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 66, 172 |
| Conread position: | 321-728 |
| Cow position: | chr11:7687163-7687589 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 29 |
| Conread position: | 321-728 |
| Cow position: | chr11:44895743-44895350 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 285 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 215, 53 |
| Conread position: | 321-730 |
| Cow position: | chr11:54208875-54209292 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 287 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 54, 171 |
| Conread position: | 322-642 |
| Cow position: | chr11:10846693-10847018 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 14, 278 |
| Conread position: | 323-590 |
| Cow position: | chr11:17925313-17925045 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 93 |
| Conread position: | 323-732 |
| Cow position: | chr11:49076409-49076013 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 284 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 56, 21 |
| Conread position: | 328-666 |
| Cow position: | chr11:8262437-8262100 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 226 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 52, 13 |
| Conread position: | 329-527 |
| Cow position: | chr11:81853333-81853130 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 51, 127 |
| Conread position: | 330-493 |
| Cow position: | chr11:72005301-72005464 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 52, 75 |
| Conread position: | 330-586 |
| Cow position: | chr11:52462353-52462614 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 181 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 331-572 |
| Cow position: | chr11:44507432-44507672 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 178 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 49, 10 |
| Conread position: | 331-684 |
| Cow position: | chr11:57628789-57628427 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 21, 14 |
| Conread position: | 332-663 |
| Cow position: | chr11:28662089-28662421 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 215 |
| Conread position: | 337-728 |
| Cow position: | chr11:29234377-29233982 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 151 |
| Conread position: | 338-730 |
| Cow position: | chr11:28055329-28054926 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 267 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 49, 155 |
| Conread position: | 345-756 |
| Cow position: | chr11:43731698-43732111 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 143 |
| Conread position: | 346-727 |
| Cow position: | chr11:21466362-21466747 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 268 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 187, 15 |
| Conread position: | 346-728 |
| Cow position: | chr11:8887877-8887481 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 155 |
| Conread position: | 346-733 |
| Cow position: | chr11:30304537-30304914 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 265 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 7, 115 |
| Conread position: | 346-733 |
| Cow position: | chr11:34020182-34020578 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 268 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 31, 146 |
| Conread position: | 350-728 |
| Cow position: | chr11:15998169-15998566 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 266 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 29, 262 |
| Conread position: | 350-728 |
| Cow position: | chr11:32071389-32071781 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 196 |
| Conread position: | 351-628 |
| Cow position: | chr11:33195334-33195059 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 36, 116 |
| Conread position: | 351-666 |
| Cow position: | chr11:40777453-40777131 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 219 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 23, 60 |
| Conread position: | 351-684 |
| Cow position: | chr11:19064972-19064630 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 35, 249 |
| Conread position: | 353-542 |
| Cow position: | chr11:48084610-48084799 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 103, 21 |
| Conread position: | 353-712 |
| Cow position: | chr11:44157953-44157584 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 255 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 22, 139 |
| Conread position: | 356-604 |
| Cow position: | chr11:66725791-66726034 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 19, 56 |
| Conread position: | 356-728 |
| Cow position: | chr11:31414951-31414568 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 5 |
| Conread position: | 357-641 |
| Cow position: | chr11:30125950-30125674 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 192 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 25, 88 |
| Conread position: | 364-728 |
| Cow position: | chr11:25526868-25527244 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 258 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 13, 198 |
| Conread position: | 364-733 |
| Cow position: | chr11:9660103-9659723 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 260 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 19, 128 |
| Conread position: | 369-727 |
| Cow position: | chr11:8895957-8896309 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 247 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 167, 11 |
| Conread position: | 375-728 |
| Cow position: | chr11:44861223-44860858 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 253 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 67, 118 |
| Conread position: | 381-756 |
| Cow position: | chr11:17220895-17220516 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 258 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 154, 75 |
| Conread position: | 432-733 |
| Cow position: | chr11:12351702-12351393 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 31, 154 |
| Conread position: | 523-756 |
| Cow position: | chr11:39833208-39833451 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 13, 42 |
| Conread position: | 607-756 |
| Cow position: | chr11:24243012-24243164 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 33, 54 |
Show alignments to all cow chromosomes.