Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01C120006.5 |
| Conread position: | 1-124 |
| Cow position: | chr13:30140185-30140310 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 102 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 35, 73 |
| Conread position: | 289-599 |
| Cow position: | chr13:15542746-15543063 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 13, 179 |
| Conread position: | 289-642 |
| Cow position: | chr13:1593875-1593514 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 242 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 13, 205 |
| Conread position: | 289-642 |
| Cow position: | chr13:30302352-30302706 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 246 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 13, 249 |
| Conread position: | 289-642 |
| Cow position: | chr13:32738528-32738181 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 241 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 13, 144 |
| Conread position: | 289-712 |
| Cow position: | chr13:4940366-4940804 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 206 |
| Conread position: | 289-712 |
| Cow position: | chr13:35756515-35756958 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 294 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 13, 64 |
| Conread position: | 289-730 |
| Cow position: | chr13:15521234-15520776 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 306 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 13, 180 |
| Conread position: | 289-730 |
| Cow position: | chr13:15925103-15924645 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 206 |
| Conread position: | 296-564 |
| Cow position: | chr13:53834059-53834334 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 296-581 |
| Cow position: | chr13:2389509-2389214 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 296-675 |
| Cow position: | chr13:50108754-50109138 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 256 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 26, 279 |
| Conread position: | 296-684 |
| Cow position: | chr13:21840909-21840509 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 270 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 26, 320 |
| Conread position: | 296-684 |
| Cow position: | chr13:31734785-31734395 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 263 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 26, 165 |
| Conread position: | 296-684 |
| Cow position: | chr13:32986757-32986364 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 254 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 26, 112 |
| Conread position: | 296-730 |
| Cow position: | chr13:34326375-34325936 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 306 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 7, 96 |
| Conread position: | 298-506 |
| Cow position: | chr13:47859615-47859821 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 75, 183 |
| Conread position: | 298-751 |
| Cow position: | chr13:46733055-46732592 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 187 |
| Conread position: | 301-663 |
| Cow position: | chr13:32525438-32525082 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 250 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 33, 60 |
| Conread position: | 301-665 |
| Cow position: | chr13:3655013-3654646 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 251 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 35, 185 |
| Conread position: | 301-684 |
| Cow position: | chr13:31613042-31612650 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 264 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 35, 192 |
| Conread position: | 301-756 |
| Cow position: | chr13:33337029-33336571 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 307 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 35, 51 |
| Conread position: | 305-642 |
| Cow position: | chr13:58261416-58261752 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 219 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 90, 22 |
| Conread position: | 305-728 |
| Cow position: | chr13:2305808-2306240 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 296 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 97, 11 |
| Conread position: | 305-756 |
| Cow position: | chr13:31560492-31560959 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 10 |
| Conread position: | 312-632 |
| Cow position: | chr13:48356640-48356952 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 68, 16 |
| Conread position: | 320-707 |
| Cow position: | chr13:6668811-6668410 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 224 |
| Conread position: | 320-750 |
| Cow position: | chr13:15080856-15080448 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 297 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 59, 122 |
| Conread position: | 321-675 |
| Cow position: | chr13:30245420-30245057 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 246 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 65, 171 |
| Conread position: | 321-730 |
| Cow position: | chr13:17307799-17308214 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 282 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 26, 31 |
| Conread position: | 321-756 |
| Cow position: | chr13:22186402-22185963 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 301 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 51, 168 |
| Conread position: | 321-756 |
| Cow position: | chr13:34043049-34042597 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 303 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 66, 110 |
| Conread position: | 332-666 |
| Cow position: | chr13:2297471-2297133 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 47, 187 |
| Conread position: | 334-751 |
| Cow position: | chr13:30140321-30140759 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 96 |
| Conread position: | 345-756 |
| Cow position: | chr13:54283933-54284349 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 292 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 34, 77 |
| Conread position: | 346-728 |
| Cow position: | chr13:33825398-33824992 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 281 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 31, 207 |
| Conread position: | 346-733 |
| Cow position: | chr13:3276498-3276900 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 276 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 31, 140 |
| Conread position: | 346-733 |
| Cow position: | chr13:31831950-31832342 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 269 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 31, 13 |
| Conread position: | 346-733 |
| Cow position: | chr13:62328240-62327842 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 267 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 31, 143 |
| Conread position: | 346-756 |
| Cow position: | chr13:30657622-30657203 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 284 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 31, 147 |
| Conread position: | 351-622 |
| Cow position: | chr13:34868116-34868388 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 198 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 32, 134 |
| Conread position: | 351-728 |
| Cow position: | chr13:34912020-34911639 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 251 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 32, 111 |
| Conread position: | 352-728 |
| Cow position: | chr13:34187337-34186950 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 267 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 100, 21 |
| Conread position: | 352-733 |
| Cow position: | chr13:34692515-34692905 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 268 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 15, 53 |
| Conread position: | 352-756 |
| Cow position: | chr13:33928202-33927797 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 287 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 15, 44 |
| Conread position: | 353-592 |
| Cow position: | chr13:32544294-32544538 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 356-684 |
| Cow position: | chr13:4481825-4482156 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 226 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 31, 137 |
| Conread position: | 364-685 |
| Cow position: | chr13:34143302-34142971 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 233 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 13, 182 |
| Conread position: | 364-741 |
| Cow position: | chr13:2909087-2908700 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 264 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 13, 214 |
| Conread position: | 378-666 |
| Cow position: | chr13:3058620-3058327 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 82, 233 |
| Conread position: | 413-756 |
| Cow position: | chr13:9043919-9044272 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 245 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 62, 47 |
| Conread position: | 414-728 |
| Cow position: | chr13:60701857-60701547 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 235 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 42, 83 |
| Conread position: | 414-745 |
| Cow position: | chr13:3338257-3338594 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 42, 73 |
| Conread position: | 488-726 |
| Cow position: | chr13:47859938-47860183 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 52, 57 |
Show alignments to all cow chromosomes.