Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01C120006.5 |
| Conread position: | 278-728 |
| Cow position: | chr14:40170533-40170072 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 317 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 10, 23 |
| Conread position: | 289-642 |
| Cow position: | chr14:17001891-17001539 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 13, 99 |
| Conread position: | 289-642 |
| Cow position: | chr14:17684559-17684911 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 247 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 13, 48 |
| Conread position: | 289-642 |
| Cow position: | chr14:20781615-20781972 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 246 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 13, 197 |
| Conread position: | 289-684 |
| Cow position: | chr14:45672887-45672483 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 269 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 33, 186 |
| Conread position: | 289-703 |
| Cow position: | chr14:7471532-7471960 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 275 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 13, 326 |
| Conread position: | 289-712 |
| Cow position: | chr14:16274141-16273702 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 282 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 13, 314 |
| Conread position: | 289-730 |
| Cow position: | chr14:37223058-37223518 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 206 |
| Conread position: | 289-730 |
| Cow position: | chr14:50109736-50110187 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 292 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 13, 127 |
| Conread position: | 289-752 |
| Cow position: | chr14:11154997-11154523 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 314 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 13, 257 |
| Conread position: | 296-544 |
| Cow position: | chr14:17241404-17241653 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 26, 166 |
| Conread position: | 296-675 |
| Cow position: | chr14:749740-750122 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 255 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 26, 44 |
| Conread position: | 296-684 |
| Cow position: | chr14:17492288-17491895 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 265 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 26, 58 |
| Conread position: | 301-493 |
| Cow position: | chr14:46653754-46653951 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 26, 131 |
| Conread position: | 301-646 |
| Cow position: | chr14:48255143-48254791 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 35, 262 |
| Conread position: | 301-756 |
| Cow position: | chr14:40338883-40339342 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 312 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 29, 166 |
| Conread position: | 303-756 |
| Cow position: | chr14:43034685-43034245 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 75 |
| Conread position: | 305-684 |
| Cow position: | chr14:22032509-22032124 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 261 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 31, 188 |
| Conread position: | 310-756 |
| Cow position: | chr14:27993095-27992664 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 17 |
| Conread position: | 316-756 |
| Cow position: | chr14:14309872-14309429 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 314 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 65, 5 |
| Conread position: | 319-666 |
| Cow position: | chr14:45160054-45160406 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 247 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 60, 12 |
| Conread position: | 320-666 |
| Cow position: | chr14:44685236-44685590 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 236 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 321-580 |
| Cow position: | chr14:44261896-44261638 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 55, 23 |
| Conread position: | 321-642 |
| Cow position: | chr14:19329076-19328753 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 231 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 66, 171 |
| Conread position: | 321-642 |
| Cow position: | chr14:28994666-28994339 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 227 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 59, 173 |
| Conread position: | 321-684 |
| Cow position: | chr14:13272453-13272820 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 248 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 65, 171 |
| Conread position: | 322-728 |
| Cow position: | chr14:43552612-43553034 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 151 |
| Conread position: | 323-685 |
| Cow position: | chr14:48150746-48150390 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 249 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 64, 21 |
| Conread position: | 328-685 |
| Cow position: | chr14:23256554-23256922 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 58, 249 |
| Conread position: | 328-756 |
| Cow position: | chr14:22018597-22019042 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 132 |
| Conread position: | 328-756 |
| Cow position: | chr14:47921220-47921647 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 9 |
| Conread position: | 329-581 |
| Cow position: | chr14:46669526-46669776 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 53, 158 |
| Conread position: | 330-685 |
| Cow position: | chr14:23529793-23529447 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 49, 93 |
| Conread position: | 331-712 |
| Cow position: | chr14:45079738-45080114 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 52, 14 |
| Conread position: | 331-756 |
| Cow position: | chr14:33235204-33235634 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 60 |
| Conread position: | 334-576 |
| Cow position: | chr14:14422804-14422560 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 49, 222 |
| Conread position: | 334-592 |
| Cow position: | chr14:44551259-44551520 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 45, 7 |
| Conread position: | 340-562 |
| Cow position: | chr14:2283197-2283424 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 344-534 |
| Cow position: | chr14:38145853-38146046 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 345-728 |
| Cow position: | chr14:11467814-11468203 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 265 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 35, 57 |
| Conread position: | 346-565 |
| Cow position: | chr14:1499969-1500193 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 31, 15 |
| Conread position: | 346-728 |
| Cow position: | chr14:45767225-45767620 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 258 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 39, 28 |
| Conread position: | 346-756 |
| Cow position: | chr14:45712762-45712337 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 288 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 31, 13 |
| Conread position: | 350-593 |
| Cow position: | chr14:41085588-41085341 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 350-750 |
| Cow position: | chr14:23691007-23690590 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 278 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 32, 414 |
| Conread position: | 351-684 |
| Cow position: | chr14:9044785-9045127 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 229 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 36, 262 |
| Conread position: | 352-660 |
| Cow position: | chr14:47623792-47624105 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 25, 106 |
| Conread position: | 353-642 |
| Cow position: | chr14:29048672-29048385 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 33, 89 |
| Conread position: | 354-680 |
| Cow position: | chr14:34774825-34775150 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 29 |
| Conread position: | 356-572 |
| Cow position: | chr14:30597150-30596923 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 27, 137 |
| Conread position: | 364-684 |
| Cow position: | chr14:36967491-36967816 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 15, 181 |
| Conread position: | 364-727 |
| Cow position: | chr14:44130161-44130531 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 248 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 13, 66 |
| Conread position: | 369-756 |
| Cow position: | chr14:48406417-48406041 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 268 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 15, 50 |
| Conread position: | 375-733 |
| Cow position: | chr14:44856179-44855808 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 245 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 81, 90 |
| Conread position: | 377-750 |
| Cow position: | chr14:13326861-13326492 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 266 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 79, 189 |
| Conread position: | 385-582 |
| Cow position: | chr14:13778120-13778320 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 412-752 |
| Cow position: | chr14:16920399-16920047 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 241 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 53, 187 |
| Conread position: | 418-733 |
| Cow position: | chr14:44421847-44422174 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 239 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 36, 65 |
| Conread position: | 546-756 |
| Cow position: | chr14:38816777-38816558 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 99, 26 |
Show alignments to all cow chromosomes.