Cow genome map

Conread name: Ss1.1-LyN1-MLN01C120006.5

Conread position: 1-129
Cow position: chr16:51685181-51685308 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 101
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 53, 0

Conread position: 279-618
Cow position: chr16:48626308-48626633 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 244
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 31, 84

Conread position: 286-642
Cow position: chr16:25340783-25341139 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 246
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 16, 51

Conread position: 286-684
Cow position: chr16:7676887-7676482 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 281
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 16, 163

Conread position: 289-641
Cow position: chr16:29045842-29046191 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 240
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 13, 157

Conread position: 289-703
Cow position: chr16:25440427-25440857 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 289
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 13, 28

Conread position: 289-703
Cow position: chr16:25458663-25458232 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 290
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 13, 32

Conread position: 289-712
Cow position: chr16:8817294-8816857 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 296
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 13, 206

Conread position: 289-730
Cow position: chr16:1568636-1568185 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 305
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 13, 73

Conread position: 289-730
Cow position: chr16:23253688-23253235 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 302
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 13, 27

Conread position: 289-730
Cow position: chr16:24881876-24881421 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 299
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 13, 206

Conread position: 294-728
Cow position: chr16:40887446-40886990 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 296
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 90, 25

Conread position: 296-675
Cow position: chr16:28171542-28171153 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 257
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 26, 320

Conread position: 296-756
Cow position: chr16:31581-32041 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 303
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 26, 71

Conread position: 298-752
Cow position: chr16:54647156-54647617 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 41

Conread position: 301-642
Cow position: chr16:10204591-10204243 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 236
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 21, 193

Conread position: 301-642
Cow position: chr16:12539097-12538754 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 235
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 86, 35

Conread position: 301-642
Cow position: chr16:28472272-28471925 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 237
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 35, 193

Conread position: 301-756
Cow position: chr16:5888328-5888779 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 316
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 79, 20

Conread position: 303-644
Cow position: chr16:32934981-32935308 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 232
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 14, 28

Conread position: 303-730
Cow position: chr16:31593081-31592635 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 191

Conread position: 305-637
Cow position: chr16:26518165-26517842 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 227
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 27, 41

Conread position: 308-752
Cow position: chr16:40297344-40296881 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 309
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 12, 194

Conread position: 311-583
Cow position: chr16:42740577-42740310 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 200
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 68, 34

Conread position: 315-730
Cow position: chr16:1430064-1430493 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 290
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 8, 180

Conread position: 316-756
Cow position: chr16:9457374-9457807 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 301
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 25, 29

Conread position: 317-728
Cow position: chr16:55112003-55111580 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 293
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 24, 28

Conread position: 318-502
Cow position: chr16:13017776-13017957 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 142
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 12, 24

Conread position: 319-684
Cow position: chr16:5918326-5918701 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 247
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 49, 295

Conread position: 320-520
Cow position: chr16:5589044-5589247 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 153
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 59, 169

Conread position: 321-582
Cow position: chr16:21185126-21185392 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 184
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 65, 0

Conread position: 321-642
Cow position: chr16:408187-407862 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 225
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 65, 171

Conread position: 321-642
Cow position: chr16:2728468-2728144 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 223
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 66, 172

Conread position: 321-642
Cow position: chr16:43898423-43898098 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 222
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 66, 122

Conread position: 321-684
Cow position: chr16:6942467-6942839 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 244
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 65, 292

Conread position: 321-751
Cow position: chr16:24155580-24155150 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 36

Conread position: 321-756
Cow position: chr16:51685293-51685739 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 170

Conread position: 323-592
Cow position: chr16:9929404-9929677 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 195
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 63, 7

Conread position: 323-647
Cow position: chr16:27004227-27004543 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 223
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 71, 23

Conread position: 324-568
Cow position: chr16:42051490-42051258 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 175
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 55, 21

Conread position: 324-660
Cow position: chr16:16687719-16688062 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 239
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 24, 74

Conread position: 324-684
Cow position: chr16:32605675-32606044 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 244
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 62, 289

Conread position: 324-728
Cow position: chr16:44964898-44965320 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 288
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 45, 128

Conread position: 324-750
Cow position: chr16:28438923-28438494 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 286
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 31, 24

Conread position: 324-756
Cow position: chr16:14669142-14669593 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 301
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 62, 32

Conread position: 328-644
Cow position: chr16:49236257-49235942 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 225
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 22, 10

Conread position: 330-644
Cow position: chr16:18688264-18687947 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 225
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 49, 95

Conread position: 333-756
Cow position: chr16:41559543-41559960 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 288
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 54, 11

Conread position: 344-727
Cow position: chr16:7905511-7905911 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 149

Conread position: 345-728
Cow position: chr16:23670715-23670327 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 258
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 28, 18

Conread position: 346-641
Cow position: chr16:15565620-15565920 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 210
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 29, 147

Conread position: 346-703
Cow position: chr16:19713978-19713613 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 247
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 31, 232

Conread position: 346-728
Cow position: chr16:20255437-20255042 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 265
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 31, 161

Conread position: 346-733
Cow position: chr16:29676435-29676034 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 121

Conread position: 346-751
Cow position: chr16:11052043-11052451 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 282
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 31, 112

Conread position: 350-638
Cow position: chr16:14422590-14422882 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 200
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 30, 95

Conread position: 351-641
Cow position: chr16:29031794-29032085 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 210
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 31, 60

Conread position: 351-684
Cow position: chr16:49257696-49257368 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 227
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 20, 188

Conread position: 351-756
Cow position: chr16:5660742-5661155 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 271
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 35, 108

Conread position: 353-642
Cow position: chr16:9777008-9777302 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 205
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 34, 140

Conread position: 353-712
Cow position: chr16:10437134-10437490 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 244
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 33, 140

Conread position: 353-756
Cow position: chr16:26662632-26663050 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 289
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 125, 107

Conread position: 356-730
Cow position: chr16:15491593-15491978 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 265
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 31, 50

Conread position: 359-684
Cow position: chr16:25157333-25157004 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 229
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 21, 52

Conread position: 364-756
Cow position: chr16:6549633-6549223 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 283
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 12, 128

Conread position: 381-684
Cow position: chr16:23982218-23982528 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 209
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 84, 110

Conread position: 385-712
Cow position: chr16:27734894-27734556 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 232
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 80, 106

Conread position: 409-664
Cow position: chr16:25293530-25293796 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 191
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 47, 137

Conread position: 409-728
Cow position: chr16:55080417-55080090 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 231
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 47, 77

Conread position: 463-642
Cow position: chr16:2411980-2411799 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 134
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 34, 78

Conread position: 475-756
Cow position: chr16:52815623-52815339 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 209
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 18, 83

Conread position: 519-756
Cow position: chr16:13017950-13018209 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 183
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 17, 0

Conread position: 538-728
Cow position: chr16:41758396-41758210 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 149
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 99, 28

Show alignments to all cow chromosomes.