Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01C120006.5 |
| Conread position: | 289-584 |
| Cow position: | chr17:6259095-6259391 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 13, 48 |
| Conread position: | 289-642 |
| Cow position: | chr17:18104293-18103933 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 247 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 20, 206 |
| Conread position: | 289-712 |
| Cow position: | chr17:16860181-16859731 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 289 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 43, 447 |
| Conread position: | 289-756 |
| Cow position: | chr17:13929062-13929547 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 326 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 42, 26 |
| Conread position: | 295-756 |
| Cow position: | chr17:6002615-6002135 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 320 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 15, 67 |
| Conread position: | 296-549 |
| Cow position: | chr17:6119545-6119805 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 26, 198 |
| Conread position: | 296-684 |
| Cow position: | chr17:1383417-1383021 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 268 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 6, 20 |
| Conread position: | 296-684 |
| Cow position: | chr17:9654055-9653663 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 264 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 26, 276 |
| Conread position: | 296-684 |
| Cow position: | chr17:11782765-11783164 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 262 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 26, 319 |
| Conread position: | 296-684 |
| Cow position: | chr17:14217631-14217231 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 267 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 6, 199 |
| Conread position: | 296-684 |
| Cow position: | chr17:22160310-22160709 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 263 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 26, 319 |
| Conread position: | 301-752 |
| Cow position: | chr17:15322231-15322684 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 159 |
| Conread position: | 301-752 |
| Cow position: | chr17:40803793-40804268 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 313 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 35, 198 |
| Conread position: | 303-756 |
| Cow position: | chr17:16889532-16889998 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 311 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 41, 33 |
| Conread position: | 305-531 |
| Cow position: | chr17:31423702-31423915 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 305-666 |
| Cow position: | chr17:249332-249688 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 17, 188 |
| Conread position: | 308-730 |
| Cow position: | chr17:11088313-11087877 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 294 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 58, 185 |
| Conread position: | 321-520 |
| Cow position: | chr17:3710776-3710582 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 55, 164 |
| Conread position: | 321-567 |
| Cow position: | chr17:4294818-4295050 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 217, 62 |
| Conread position: | 321-642 |
| Cow position: | chr17:3643414-3643089 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 226 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 52, 104 |
| Conread position: | 321-666 |
| Cow position: | chr17:8208531-8208880 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 239 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 59, 253 |
| Conread position: | 321-675 |
| Cow position: | chr17:2261538-2261894 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 246 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 65, 138 |
| Conread position: | 321-684 |
| Cow position: | chr17:24633378-24633747 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 65, 148 |
| Conread position: | 321-684 |
| Cow position: | chr17:24780473-24780841 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 254 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 65, 27 |
| Conread position: | 321-752 |
| Cow position: | chr17:153030-152607 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 283 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 84, 30 |
| Conread position: | 321-756 |
| Cow position: | chr17:228874-228424 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 295 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 63, 113 |
| Conread position: | 321-756 |
| Cow position: | chr17:4081072-4081520 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 300 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 58, 259 |
| Conread position: | 323-684 |
| Cow position: | chr17:15435217-15435584 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 15, 136 |
| Conread position: | 325-674 |
| Cow position: | chr17:15157527-15157180 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 236 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 61, 134 |
| Conread position: | 328-673 |
| Cow position: | chr17:20401105-20401463 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 52, 10 |
| Conread position: | 329-556 |
| Cow position: | chr17:12670906-12670677 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 50, 149 |
| Conread position: | 330-712 |
| Cow position: | chr17:25737094-25737488 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 268 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 50, 163 |
| Conread position: | 333-666 |
| Cow position: | chr17:2249148-2248808 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 49, 267 |
| Conread position: | 333-666 |
| Cow position: | chr17:20666293-20665953 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 224 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 53, 280 |
| Conread position: | 333-733 |
| Cow position: | chr17:35591660-35592065 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 273 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 20, 47 |
| Conread position: | 344-570 |
| Cow position: | chr17:19609455-19609221 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 346-567 |
| Cow position: | chr17:55234-55010 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 19, 100 |
| Conread position: | 346-600 |
| Cow position: | chr17:32024747-32024491 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 106, 222 |
| Conread position: | 346-666 |
| Cow position: | chr17:22430030-22429709 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 50, 15 |
| Conread position: | 346-728 |
| Cow position: | chr17:27345258-27345650 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 265 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 17, 27 |
| Conread position: | 346-756 |
| Cow position: | chr17:1284310-1283903 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 275 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 34, 99 |
| Conread position: | 346-756 |
| Cow position: | chr17:14326051-14325622 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 287 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 24, 150 |
| Conread position: | 353-728 |
| Cow position: | chr17:15370535-15370921 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 30, 8 |
| Conread position: | 354-751 |
| Cow position: | chr17:23857594-23857168 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 284 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 50, 246 |
| Conread position: | 356-676 |
| Cow position: | chr17:28109557-28109869 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 221 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 172, 5 |
| Conread position: | 357-703 |
| Cow position: | chr17:19269903-19269549 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 237 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 37, 55 |
| Conread position: | 364-581 |
| Cow position: | chr17:20088283-20088067 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 92, 23 |
| Conread position: | 409-751 |
| Cow position: | chr17:15381518-15381859 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 85, 103 |
| Conread position: | 413-732 |
| Cow position: | chr17:13894015-13893687 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 230, 127 |
| Conread position: | 423-730 |
| Cow position: | chr17:6089636-6089314 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 37, 188 |
| Conread position: | 424-660 |
| Cow position: | chr17:2737905-2738145 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 36, 117 |
| Conread position: | 488-728 |
| Cow position: | chr17:20183634-20183384 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 24, 101 |
Show alignments to all cow chromosomes.