Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01C120006.5 |
| Conread position: | 289-534 |
| Cow position: | chr18:42244950-42244709 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 33, 54 |
| Conread position: | 289-581 |
| Cow position: | chr18:14129890-14130188 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 13, 132 |
| Conread position: | 289-642 |
| Cow position: | chr18:28974302-28973948 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 246 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 13, 205 |
| Conread position: | 289-642 |
| Cow position: | chr18:51480435-51480792 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 13, 180 |
| Conread position: | 289-684 |
| Cow position: | chr18:41841230-41840824 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 278 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 13, 206 |
| Conread position: | 289-712 |
| Cow position: | chr18:23797246-23797680 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 299 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 13, 215 |
| Conread position: | 289-712 |
| Cow position: | chr18:37504661-37505096 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 301 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 13, 175 |
| Conread position: | 289-728 |
| Cow position: | chr18:33335469-33335920 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 305 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 8, 27 |
| Conread position: | 289-752 |
| Cow position: | chr18:27838702-27838232 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 310 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 13, 64 |
| Conread position: | 296-684 |
| Cow position: | chr18:37586061-37585663 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 264 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 26, 306 |
| Conread position: | 296-684 |
| Cow position: | chr18:44621360-44621760 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 261 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 30, 320 |
| Conread position: | 296-730 |
| Cow position: | chr18:47741620-47742073 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 319 |
| Conread position: | 296-756 |
| Cow position: | chr18:19351980-19352472 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 316 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 6, 327 |
| Conread position: | 298-642 |
| Cow position: | chr18:40193221-40193572 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 16, 199 |
| Conread position: | 301-642 |
| Cow position: | chr18:25349648-25349994 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 30, 192 |
| Conread position: | 301-712 |
| Cow position: | chr18:36507941-36508366 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 283 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 35, 303 |
| Conread position: | 313-684 |
| Cow position: | chr18:54172222-54171844 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 262 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 60, 105 |
| Conread position: | 315-756 |
| Cow position: | chr18:29945847-29946265 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 23 |
| Conread position: | 316-642 |
| Cow position: | chr18:14415603-14415931 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 228 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 71, 176 |
| Conread position: | 319-666 |
| Cow position: | chr18:16660368-16660024 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 146, 12 |
| Conread position: | 321-666 |
| Cow position: | chr18:55089296-55088944 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 65, 223 |
| Conread position: | 321-756 |
| Cow position: | chr18:9187132-9186680 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 39 |
| Conread position: | 322-666 |
| Cow position: | chr18:35335117-35335470 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 18, 58 |
| Conread position: | 328-571 |
| Cow position: | chr18:35287891-35288134 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 46, 10 |
| Conread position: | 328-756 |
| Cow position: | chr18:37599896-37599446 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 296 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 50, 10 |
| Conread position: | 329-756 |
| Cow position: | chr18:46878331-46877917 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 297 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 53, 88 |
| Conread position: | 330-592 |
| Cow position: | chr18:11275450-11275194 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 56, 129 |
| Conread position: | 330-751 |
| Cow position: | chr18:16176968-16176536 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 292 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 57, 163 |
| Conread position: | 331-684 |
| Cow position: | chr18:51660063-51660418 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 237 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 56, 128 |
| Conread position: | 345-728 |
| Cow position: | chr18:45958356-45958736 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 281 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 35, 60 |
| Conread position: | 346-673 |
| Cow position: | chr18:39748244-39748566 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 110, 15 |
| Conread position: | 346-728 |
| Cow position: | chr18:48221533-48221930 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 266 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 31, 60 |
| Conread position: | 346-728 |
| Cow position: | chr18:51257641-51258030 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 13 |
| Conread position: | 346-733 |
| Cow position: | chr18:32293437-32293826 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 263 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 106, 15 |
| Conread position: | 346-733 |
| Cow position: | chr18:43147271-43146868 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 199 |
| Conread position: | 346-742 |
| Cow position: | chr18:23944717-23944309 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 198 |
| Conread position: | 347-733 |
| Cow position: | chr18:2020022-2019628 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 267 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 16, 26 |
| Conread position: | 350-733 |
| Cow position: | chr18:33358523-33358925 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 268 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 37, 197 |
| Conread position: | 356-622 |
| Cow position: | chr18:47719905-47719634 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 21, 102 |
| Conread position: | 362-684 |
| Cow position: | chr18:22602157-22602488 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 224 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 25, 109 |
| Conread position: | 369-642 |
| Cow position: | chr18:40478064-40478338 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 77, 94 |
| Conread position: | 375-642 |
| Cow position: | chr18:33268529-33268796 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 81, 43 |
| Conread position: | 375-733 |
| Cow position: | chr18:17992876-17992505 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 77, 168 |
| Conread position: | 378-642 |
| Cow position: | chr18:32651684-32651950 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 85, 112 |
| Conread position: | 385-712 |
| Cow position: | chr18:27986724-27987060 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 221 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 80, 157 |
| Conread position: | 405-751 |
| Cow position: | chr18:44601258-44601609 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 255 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 47, 119 |
| Conread position: | 408-666 |
| Cow position: | chr18:19540152-19539894 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 74, 39 |
| Conread position: | 435-751 |
| Cow position: | chr18:16393894-16393564 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 235 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 22, 61 |
| Conread position: | 480-744 |
| Cow position: | chr18:16877278-16877538 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 60, 90 |
| Conread position: | 494-678 |
| Cow position: | chr18:54269276-54269461 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 38, 47 |
| Conread position: | 507-728 |
| Cow position: | chr18:53785660-53785889 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 26, 33 |
Show alignments to all cow chromosomes.