Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01C120006.5 |
| Conread position: | 289-642 |
| Cow position: | chr19:171810-172170 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 245 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 13, 206 |
| Conread position: | 289-684 |
| Cow position: | chr19:203562-203966 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 270 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 13, 293 |
| Conread position: | 289-712 |
| Cow position: | chr19:55078349-55078783 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 64 |
| Conread position: | 289-730 |
| Cow position: | chr19:28582035-28581597 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 292 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 20, 48 |
| Conread position: | 289-750 |
| Cow position: | chr19:39390126-39390593 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 313 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 13, 48 |
| Conread position: | 289-756 |
| Cow position: | chr19:40852831-40852347 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 317 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 13, 205 |
| Conread position: | 296-666 |
| Cow position: | chr19:772218-772584 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 240 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 90, 211 |
| Conread position: | 296-666 |
| Cow position: | chr19:32212454-32212085 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 6, 165 |
| Conread position: | 296-675 |
| Cow position: | chr19:52152641-52152265 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 248 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 90, 164 |
| Conread position: | 296-730 |
| Cow position: | chr19:32193190-32193636 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 290 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 26, 154 |
| Conread position: | 298-730 |
| Cow position: | chr19:4385098-4385540 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 292 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 167, 81 |
| Conread position: | 309-728 |
| Cow position: | chr19:359872-359447 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 287 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 21, 155 |
| Conread position: | 315-751 |
| Cow position: | chr19:7450366-7449937 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 91 |
| Conread position: | 320-518 |
| Cow position: | chr19:544258-544056 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 320-684 |
| Cow position: | chr19:32244313-32244689 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 249 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 66, 18 |
| Conread position: | 321-641 |
| Cow position: | chr19:10672673-10672348 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 66, 172 |
| Conread position: | 321-684 |
| Cow position: | chr19:685488-685848 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 248 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 65, 138 |
| Conread position: | 321-684 |
| Cow position: | chr19:7341705-7342073 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 253 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 65, 234 |
| Conread position: | 321-728 |
| Cow position: | chr19:20111591-20111171 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 286 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 60, 261 |
| Conread position: | 323-728 |
| Cow position: | chr19:35978905-35979321 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 21 |
| Conread position: | 324-750 |
| Cow position: | chr19:32183808-32183370 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 233 |
| Conread position: | 327-703 |
| Cow position: | chr19:1031751-1032131 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 255 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 26, 133 |
| Conread position: | 328-583 |
| Cow position: | chr19:36477002-36477254 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 48, 10 |
| Conread position: | 328-584 |
| Cow position: | chr19:6553050-6553293 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 51, 10 |
| Conread position: | 329-513 |
| Cow position: | chr19:42247988-42248168 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 106, 53 |
| Conread position: | 330-756 |
| Cow position: | chr19:20125274-20125704 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 77 |
| Conread position: | 331-684 |
| Cow position: | chr19:28592926-28593282 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 238 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 55, 80 |
| Conread position: | 337-727 |
| Cow position: | chr19:536540-536928 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 267 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 46, 105 |
| Conread position: | 345-667 |
| Cow position: | chr19:42649408-42649090 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 34, 97 |
| Conread position: | 346-642 |
| Cow position: | chr19:33941270-33941571 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 212 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 41, 147 |
| Conread position: | 346-665 |
| Cow position: | chr19:76574-76257 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 33, 123 |
| Conread position: | 346-733 |
| Cow position: | chr19:4533081-4532690 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 272 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 31, 13 |
| Conread position: | 350-732 |
| Cow position: | chr19:4252695-4252296 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 270 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 27, 223 |
| Conread position: | 351-684 |
| Cow position: | chr19:43143379-43143721 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 228 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 35, 245 |
| Conread position: | 353-728 |
| Cow position: | chr19:32665200-32665587 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 266 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 113, 138 |
| Conread position: | 353-733 |
| Cow position: | chr19:29209232-29209623 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 274 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 24, 105 |
| Conread position: | 354-684 |
| Cow position: | chr19:171076-170737 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 222 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 33, 10 |
| Conread position: | 360-728 |
| Cow position: | chr19:15953551-15953911 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 253 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 176, 94 |
| Conread position: | 364-666 |
| Cow position: | chr19:416325-416638 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 215 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 16, 42 |
| Conread position: | 364-733 |
| Cow position: | chr19:30371952-30372346 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 268 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 13, 187 |
| Conread position: | 374-644 |
| Cow position: | chr19:39688238-39688504 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 159, 82 |
| Conread position: | 375-542 |
| Cow position: | chr19:801680-801849 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 77, 96 |
| Conread position: | 378-712 |
| Cow position: | chr19:7488005-7488350 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 87, 113 |
| Conread position: | 423-684 |
| Cow position: | chr19:32202495-32202752 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 183 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 33, 140 |
| Conread position: | 473-681 |
| Cow position: | chr19:17018316-17018517 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 63, 93 |
| Conread position: | 521-756 |
| Cow position: | chr19:42299659-42299408 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 19, 119 |
| Conread position: | 538-756 |
| Cow position: | chr19:42248670-42248897 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 28, 32 |
Show alignments to all cow chromosomes.