Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01C120006.5 |
| Conread position: | 1-128 |
| Cow position: | chr20:7086783-7086657 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 289-584 |
| Cow position: | chr20:8004956-8004654 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 13, 204 |
| Conread position: | 289-642 |
| Cow position: | chr20:23470104-23469743 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 13, 206 |
| Conread position: | 289-642 |
| Cow position: | chr20:27868754-27869113 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 242 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 13, 133 |
| Conread position: | 289-684 |
| Cow position: | chr20:21913895-21914288 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 262 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 13, 93 |
| Conread position: | 289-685 |
| Cow position: | chr20:23798439-23798845 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 272 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 20, 205 |
| Conread position: | 289-712 |
| Cow position: | chr20:30683895-30684329 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 291 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 13, 55 |
| Conread position: | 296-564 |
| Cow position: | chr20:31123969-31124244 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 296-573 |
| Cow position: | chr20:822321-822598 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 26, 165 |
| Conread position: | 296-684 |
| Cow position: | chr20:19437528-19437920 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 252 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 26, 165 |
| Conread position: | 297-756 |
| Cow position: | chr20:29572626-29572145 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 329 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 7, 58 |
| Conread position: | 298-684 |
| Cow position: | chr20:25851429-25851028 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 267 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 16, 201 |
| Conread position: | 299-723 |
| Cow position: | chr20:8994245-8993810 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 290 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 80, 17 |
| Conread position: | 301-642 |
| Cow position: | chr20:7116901-7116553 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 30, 193 |
| Conread position: | 301-750 |
| Cow position: | chr20:20755860-20755386 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 318 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 23, 119 |
| Conread position: | 303-730 |
| Cow position: | chr20:21393142-21393579 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 244 |
| Conread position: | 311-703 |
| Cow position: | chr20:12439182-12438775 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 271 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 5, 183 |
| Conread position: | 316-475 |
| Cow position: | chr20:13435573-13435418 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 70, 20 |
| Conread position: | 316-756 |
| Cow position: | chr20:2791764-2791303 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 315 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 14, 30 |
| Conread position: | 319-684 |
| Cow position: | chr20:13665578-13665239 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 253 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 54, 19 |
| Conread position: | 321-728 |
| Cow position: | chr20:22718076-22717681 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 290 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 160, 35 |
| Conread position: | 321-756 |
| Cow position: | chr20:2676711-2677164 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 29 |
| Conread position: | 321-756 |
| Cow position: | chr20:22206126-22206590 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 312 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 57, 25 |
| Conread position: | 328-756 |
| Cow position: | chr20:28593341-28593786 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 300 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 41, 10 |
| Conread position: | 329-600 |
| Cow position: | chr20:5575291-5575553 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 194 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 54, 113 |
| Conread position: | 330-693 |
| Cow position: | chr20:35103553-35103922 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 239 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 57, 28 |
| Conread position: | 331-750 |
| Cow position: | chr20:20905581-20905164 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 167 |
| Conread position: | 334-629 |
| Cow position: | chr20:11276671-11276393 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 199, 7 |
| Conread position: | 345-640 |
| Cow position: | chr20:10102926-10102635 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 35, 23 |
| Conread position: | 345-728 |
| Cow position: | chr20:24614165-24614551 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 253 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 34, 16 |
| Conread position: | 346-666 |
| Cow position: | chr20:3252524-3252191 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 31, 204 |
| Conread position: | 346-728 |
| Cow position: | chr20:4800030-4799637 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 274 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 7, 92 |
| Conread position: | 346-756 |
| Cow position: | chr20:8313811-8313391 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 287 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 110, 28 |
| Conread position: | 353-756 |
| Cow position: | chr20:28160403-28160824 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 293 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 33, 139 |
| Conread position: | 356-730 |
| Cow position: | chr20:13762531-13762918 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 267 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 31, 136 |
| Conread position: | 357-684 |
| Cow position: | chr20:5561089-5560753 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 30, 256 |
| Conread position: | 361-642 |
| Cow position: | chr20:15064397-15064685 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 76, 142 |
| Conread position: | 363-666 |
| Cow position: | chr20:24516503-24516808 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 24, 129 |
| Conread position: | 364-728 |
| Cow position: | chr20:5483827-5484203 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 260 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 17, 61 |
| Conread position: | 369-733 |
| Cow position: | chr20:13757900-13758275 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 253 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 10, 192 |
| Conread position: | 375-632 |
| Cow position: | chr20:3032584-3032835 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 81, 89 |
| Conread position: | 375-642 |
| Cow position: | chr20:28565954-28565680 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 93, 116 |
| Conread position: | 408-732 |
| Cow position: | chr20:7085889-7085559 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 48, 115 |
| Conread position: | 461-684 |
| Cow position: | chr20:19192395-19192166 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 32, 149 |
| Conread position: | 462-703 |
| Cow position: | chr20:35119059-35119310 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 16, 79 |
Show alignments to all cow chromosomes.