Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01C120006.5 |
| Conread position: | 289-642 |
| Cow position: | chr21:1190717-1191083 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 246 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 13, 257 |
| Conread position: | 289-642 |
| Cow position: | chr21:31559972-31559619 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 244 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 13, 175 |
| Conread position: | 289-730 |
| Cow position: | chr21:10566354-10566808 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 304 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 13, 286 |
| Conread position: | 289-730 |
| Cow position: | chr21:10849755-10850215 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 309 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 13, 206 |
| Conread position: | 289-756 |
| Cow position: | chr21:2476832-2476360 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 309 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 33, 99 |
| Conread position: | 296-502 |
| Cow position: | chr21:19609798-19610010 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 296-666 |
| Cow position: | chr21:37044604-37044974 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 247 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 26, 92 |
| Conread position: | 296-684 |
| Cow position: | chr21:4090331-4090730 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 256 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 26, 308 |
| Conread position: | 296-684 |
| Cow position: | chr21:11505270-11505668 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 265 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 26, 19 |
| Conread position: | 296-684 |
| Cow position: | chr21:26638774-26638384 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 262 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 26, 165 |
| Conread position: | 296-684 |
| Cow position: | chr21:26819331-26818940 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 261 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 26, 275 |
| Conread position: | 296-684 |
| Cow position: | chr21:28529860-28529463 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 267 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 26, 132 |
| Conread position: | 296-684 |
| Cow position: | chr21:39424751-39425144 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 259 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 26, 166 |
| Conread position: | 296-750 |
| Cow position: | chr21:2510339-2510796 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 298 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 26, 111 |
| Conread position: | 300-684 |
| Cow position: | chr21:4083341-4083727 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 112 |
| Conread position: | 301-666 |
| Cow position: | chr21:2501625-2501991 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 18, 116 |
| Conread position: | 301-675 |
| Cow position: | chr21:46915280-46915659 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 21, 185 |
| Conread position: | 304-648 |
| Cow position: | chr21:23704732-23705071 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 26, 39 |
| Conread position: | 305-642 |
| Cow position: | chr21:33251083-33251427 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 17, 190 |
| Conread position: | 305-728 |
| Cow position: | chr21:23860478-23860914 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 11 |
| Conread position: | 305-750 |
| Cow position: | chr21:27708453-27708908 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 297 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 17, 310 |
| Conread position: | 308-756 |
| Cow position: | chr21:993326-992859 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 11 |
| Conread position: | 311-666 |
| Cow position: | chr21:13124298-13123938 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 17, 35 |
| Conread position: | 314-565 |
| Cow position: | chr21:18692457-18692717 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 191 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 61, 28 |
| Conread position: | 320-742 |
| Cow position: | chr21:358733-359162 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 289 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 60, 41 |
| Conread position: | 321-642 |
| Cow position: | chr21:34055204-34054880 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 107 |
| Conread position: | 321-684 |
| Cow position: | chr21:11453944-11453575 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 247 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 66, 253 |
| Conread position: | 321-684 |
| Cow position: | chr21:12056288-12055919 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 65, 253 |
| Conread position: | 321-684 |
| Cow position: | chr21:17572639-17573002 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 242 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 139, 65 |
| Conread position: | 322-494 |
| Cow position: | chr21:35089415-35089587 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 57, 23 |
| Conread position: | 334-742 |
| Cow position: | chr21:4183266-4183673 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 283 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 57, 7 |
| Conread position: | 334-756 |
| Cow position: | chr21:20745017-20744598 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 295 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 44, 112 |
| Conread position: | 338-756 |
| Cow position: | chr21:21516937-21517357 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 146 |
| Conread position: | 345-756 |
| Cow position: | chr21:216046-216468 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 280 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 42, 74 |
| Conread position: | 346-664 |
| Cow position: | chr21:2530392-2530068 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 346-728 |
| Cow position: | chr21:2716935-2716550 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 256 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 31, 139 |
| Conread position: | 346-728 |
| Cow position: | chr21:2769717-2769327 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 263 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 188, 115 |
| Conread position: | 346-728 |
| Cow position: | chr21:3615028-3615425 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 277 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 8, 42 |
| Conread position: | 346-733 |
| Cow position: | chr21:34292756-34293155 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 272 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 106, 33 |
| Conread position: | 346-733 |
| Cow position: | chr21:35596115-35596506 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 263 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 31, 112 |
| Conread position: | 346-733 |
| Cow position: | chr21:47939213-47939614 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 265 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 31, 352 |
| Conread position: | 346-752 |
| Cow position: | chr21:34259476-34259063 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 280 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 117, 197 |
| Conread position: | 350-731 |
| Cow position: | chr21:444880-445260 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 273 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 36, 67 |
| Conread position: | 353-641 |
| Cow position: | chr21:3778509-3778801 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 34, 66 |
| Conread position: | 353-730 |
| Cow position: | chr21:36714383-36714767 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 268 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 124, 96 |
| Conread position: | 356-730 |
| Cow position: | chr21:47947862-47948244 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 257 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 96, 127 |
| Conread position: | 358-733 |
| Cow position: | chr21:2789231-2788853 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 257 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 98, 11 |
| Conread position: | 359-756 |
| Cow position: | chr21:48115855-48116270 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 273 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 23, 215 |
| Conread position: | 363-727 |
| Cow position: | chr21:25992867-25992501 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 249 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 17, 206 |
| Conread position: | 364-728 |
| Cow position: | chr21:4222943-4222554 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 264 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 13, 81 |
| Conread position: | 369-684 |
| Cow position: | chr21:9891372-9891675 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 124, 80 |
| Conread position: | 374-582 |
| Cow position: | chr21:2674873-2674662 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 374-756 |
| Cow position: | chr21:26147133-26146768 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 258 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 161, 30 |
| Conread position: | 378-756 |
| Cow position: | chr21:6699793-6699407 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 170 |
| Conread position: | 385-684 |
| Cow position: | chr21:30561577-30561883 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 67, 106 |
| Conread position: | 502-660 |
| Cow position: | chr21:10762086-10762247 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 604-756 |
| Cow position: | chr21:3194393-3194552 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 44, 0 |
Show alignments to all cow chromosomes.