Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01C120006.5 |
| Conread position: | 289-629 |
| Cow position: | chr24:14385020-14384678 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 13, 203 |
| Conread position: | 289-659 |
| Cow position: | chr24:6057268-6057639 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 70 |
| Conread position: | 296-531 |
| Cow position: | chr24:7712696-7712462 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 26, 59 |
| Conread position: | 296-578 |
| Cow position: | chr24:5993375-5993089 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 26, 168 |
| Conread position: | 296-582 |
| Cow position: | chr24:20267813-20268106 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 296-684 |
| Cow position: | chr24:6083612-6084011 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 265 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 26, 306 |
| Conread position: | 296-684 |
| Cow position: | chr24:6645013-6645407 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 261 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 26, 280 |
| Conread position: | 296-684 |
| Cow position: | chr24:9189135-9188737 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 268 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 26, 179 |
| Conread position: | 296-684 |
| Cow position: | chr24:22792771-22793168 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 265 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 26, 277 |
| Conread position: | 296-684 |
| Cow position: | chr24:44017141-44017540 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 267 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 26, 58 |
| Conread position: | 296-730 |
| Cow position: | chr24:6433833-6434289 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 304 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 30, 322 |
| Conread position: | 296-730 |
| Cow position: | chr24:7060707-7061148 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 287 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 26, 83 |
| Conread position: | 296-733 |
| Cow position: | chr24:6335293-6335748 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 306 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 6, 124 |
| Conread position: | 301-573 |
| Cow position: | chr24:13181730-13181460 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 73, 30 |
| Conread position: | 301-756 |
| Cow position: | chr24:12798145-12797688 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 312 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 80, 35 |
| Conread position: | 304-742 |
| Cow position: | chr24:17187152-17187600 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 301 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 31, 15 |
| Conread position: | 305-703 |
| Cow position: | chr24:12114426-12114023 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 270 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 17, 183 |
| Conread position: | 310-756 |
| Cow position: | chr24:39678059-39678489 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 301 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 72, 18 |
| Conread position: | 312-642 |
| Cow position: | chr24:12085813-12086146 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 233 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 23, 34 |
| Conread position: | 317-666 |
| Cow position: | chr24:15392678-15392335 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 63, 13 |
| Conread position: | 318-750 |
| Cow position: | chr24:6351812-6352246 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 369 |
| Conread position: | 320-684 |
| Cow position: | chr24:16649672-16649306 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 253 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 9, 26 |
| Conread position: | 321-566 |
| Cow position: | chr24:29186428-29186678 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 66, 172 |
| Conread position: | 321-642 |
| Cow position: | chr24:19833006-19833329 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 66, 223 |
| Conread position: | 321-728 |
| Cow position: | chr24:12289094-12288683 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 100 |
| Conread position: | 321-728 |
| Cow position: | chr24:32330969-32331371 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 288 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 58, 219 |
| Conread position: | 321-756 |
| Cow position: | chr24:14873718-14873273 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 396 |
| Conread position: | 323-756 |
| Cow position: | chr24:14885619-14885175 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 298 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 63, 21 |
| Conread position: | 324-669 |
| Cow position: | chr24:36707486-36707827 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 229 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 55, 166 |
| Conread position: | 324-756 |
| Cow position: | chr24:36296793-36297235 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 163 |
| Conread position: | 328-571 |
| Cow position: | chr24:32125863-32125630 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 51, 10 |
| Conread position: | 328-684 |
| Cow position: | chr24:13021301-13021662 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 244 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 59, 264 |
| Conread position: | 328-684 |
| Cow position: | chr24:33739713-33739350 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 238 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 58, 205 |
| Conread position: | 329-756 |
| Cow position: | chr24:35841972-35841543 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 297 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 51, 100 |
| Conread position: | 334-585 |
| Cow position: | chr24:37216363-37216618 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 52, 7 |
| Conread position: | 338-572 |
| Cow position: | chr24:35991012-35990777 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 41, 78 |
| Conread position: | 341-756 |
| Cow position: | chr24:6537214-6537621 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 15 |
| Conread position: | 345-665 |
| Cow position: | chr24:12161527-12161852 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 31, 6 |
| Conread position: | 345-671 |
| Cow position: | chr24:12207790-12208113 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 107, 120 |
| Conread position: | 345-728 |
| Cow position: | chr24:35838979-35838579 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 271 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 32, 19 |
| Conread position: | 348-650 |
| Cow position: | chr24:12236711-12237008 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 40, 140 |
| Conread position: | 359-642 |
| Cow position: | chr24:4415871-4415577 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 28, 249 |
| Conread position: | 366-684 |
| Cow position: | chr24:12485650-12485323 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 211 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 21, 238 |
| Conread position: | 367-644 |
| Cow position: | chr24:29325853-29326129 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 89, 42 |
| Conread position: | 374-666 |
| Cow position: | chr24:36560394-36560109 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 147, 82 |
| Conread position: | 375-579 |
| Cow position: | chr24:37301395-37301191 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 81, 108 |
| Conread position: | 378-756 |
| Cow position: | chr24:12567936-12568318 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 38 |
| Conread position: | 426-730 |
| Cow position: | chr24:2635849-2636168 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 210 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 34, 185 |
| Conread position: | 435-666 |
| Cow position: | chr24:8029889-8030125 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 25, 176 |
| Conread position: | 465-728 |
| Cow position: | chr24:584427-584159 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 31, 65 |
| Conread position: | 490-751 |
| Cow position: | chr24:12940003-12940270 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 188 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 42, 80 |
Show alignments to all cow chromosomes.