Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01C120006.5 |
| Conread position: | 1-129 |
| Cow position: | chr28:17311280-17311407 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 102 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 35, 70 |
| Conread position: | 289-642 |
| Cow position: | chr28:3193228-3192884 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 242 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 13, 175 |
| Conread position: | 289-642 |
| Cow position: | chr28:5565408-5565768 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 247 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 13, 206 |
| Conread position: | 289-642 |
| Cow position: | chr28:13522280-13522634 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 48 |
| Conread position: | 289-684 |
| Cow position: | chr28:1168617-1168214 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 273 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 13, 206 |
| Conread position: | 289-684 |
| Cow position: | chr28:8378113-8378517 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 273 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 13, 207 |
| Conread position: | 289-703 |
| Cow position: | chr28:29819118-29819545 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 294 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 13, 66 |
| Conread position: | 289-729 |
| Cow position: | chr28:17388028-17388487 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 303 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 13, 206 |
| Conread position: | 289-730 |
| Cow position: | chr28:781944-782402 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 306 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 13, 207 |
| Conread position: | 289-752 |
| Cow position: | chr28:2083151-2083630 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 313 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 13, 257 |
| Conread position: | 291-531 |
| Cow position: | chr28:7790685-7790444 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 34, 124 |
| Conread position: | 293-728 |
| Cow position: | chr28:2591479-2591919 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 294 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 84, 7 |
| Conread position: | 296-666 |
| Cow position: | chr28:13441323-13440944 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 250 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 26, 319 |
| Conread position: | 296-684 |
| Cow position: | chr28:5796384-5796768 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 260 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 86, 48 |
| Conread position: | 296-730 |
| Cow position: | chr28:15950535-15950986 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 301 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 26, 319 |
| Conread position: | 296-756 |
| Cow position: | chr28:1952697-1953165 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 305 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 26, 177 |
| Conread position: | 301-642 |
| Cow position: | chr28:22261591-22261244 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 237 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 35, 244 |
| Conread position: | 301-642 |
| Cow position: | chr28:34593403-34593750 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 240 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 19, 193 |
| Conread position: | 301-712 |
| Cow position: | chr28:17667952-17667529 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 284 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 35, 303 |
| Conread position: | 301-730 |
| Cow position: | chr28:13459534-13459976 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 162 |
| Conread position: | 301-730 |
| Cow position: | chr28:18520901-18520454 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 296 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 35, 193 |
| Conread position: | 305-679 |
| Cow position: | chr28:3774272-3773889 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 41 |
| Conread position: | 316-750 |
| Cow position: | chr28:34324409-34324850 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 49 |
| Conread position: | 316-756 |
| Cow position: | chr28:15584973-15585422 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 176 |
| Conread position: | 320-565 |
| Cow position: | chr28:6657760-6657514 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 63, 86 |
| Conread position: | 320-666 |
| Cow position: | chr28:15920879-15920533 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 222 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 66, 139 |
| Conread position: | 321-489 |
| Cow position: | chr28:18102322-18102154 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 57, 37 |
| Conread position: | 321-532 |
| Cow position: | chr28:489071-489286 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 321-533 |
| Cow position: | chr28:17311392-17311598 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 127, 53 |
| Conread position: | 321-673 |
| Cow position: | chr28:32792798-32792439 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 244 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 66, 172 |
| Conread position: | 321-730 |
| Cow position: | chr28:14750128-14750554 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 282 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 17, 293 |
| Conread position: | 328-684 |
| Cow position: | chr28:6780739-6780377 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 229 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 59, 164 |
| Conread position: | 328-728 |
| Cow position: | chr28:1387801-1387390 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 282 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 55, 14 |
| Conread position: | 329-728 |
| Cow position: | chr28:22827653-22828055 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 129 |
| Conread position: | 331-684 |
| Cow position: | chr28:18089411-18089055 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 254 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 43, 99 |
| Conread position: | 345-733 |
| Cow position: | chr28:5812318-5812717 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 271 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 98, 32 |
| Conread position: | 345-733 |
| Cow position: | chr28:21358626-21359018 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 279 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 35, 81 |
| Conread position: | 346-665 |
| Cow position: | chr28:21325400-21325721 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 37, 76 |
| Conread position: | 346-666 |
| Cow position: | chr28:9953740-9954069 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 224 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 8, 148 |
| Conread position: | 346-672 |
| Cow position: | chr28:9155670-9155346 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 230 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 31, 13 |
| Conread position: | 346-728 |
| Cow position: | chr28:15681499-15681892 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 264 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 30, 147 |
| Conread position: | 348-619 |
| Cow position: | chr28:34648552-34648816 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 108, 18 |
| Conread position: | 348-728 |
| Cow position: | chr28:8721836-8721444 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 264 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 35, 228 |
| Conread position: | 350-703 |
| Cow position: | chr28:7900974-7901326 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 241 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 126, 30 |
| Conread position: | 351-664 |
| Cow position: | chr28:18181737-18181428 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 214 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 31, 93 |
| Conread position: | 355-609 |
| Cow position: | chr28:15617428-15617673 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 97, 19 |
| Conread position: | 356-579 |
| Cow position: | chr28:26007652-26007877 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 107, 23 |
| Conread position: | 356-642 |
| Cow position: | chr28:10582369-10582079 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 205 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 37, 137 |
| Conread position: | 359-712 |
| Cow position: | chr28:12149941-12150295 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 246 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 28, 134 |
| Conread position: | 368-732 |
| Cow position: | chr28:32331768-32331398 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 260 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 88, 60 |
| Conread position: | 382-642 |
| Cow position: | chr28:1815223-1814961 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 83, 109 |
| Conread position: | 409-650 |
| Cow position: | chr28:14491136-14491374 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 47, 88 |
| Conread position: | 412-641 |
| Cow position: | chr28:7001662-7001894 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 168 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 53, 79 |
| Conread position: | 414-749 |
| Cow position: | chr28:10591696-10591352 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 243 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 16, 148 |
| Conread position: | 488-728 |
| Cow position: | chr28:4381067-4380834 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 12, 88 |
| Conread position: | 490-725 |
| Cow position: | chr28:2846740-2846508 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 13, 73 |
| Conread position: | 491-756 |
| Cow position: | chr28:18102171-18101901 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 45, 83 |
| Conread position: | 507-733 |
| Cow position: | chr28:24652062-24652301 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 29, 0 |
Show alignments to all cow chromosomes.