Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01C120006.5 |
| Conread position: | 1-124 |
| Cow position: | chr29:19893205-19893327 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 16-127 |
| Cow position: | chr29:4635511-4635400 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 271-684 |
| Cow position: | chr29:35296395-35296793 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 273 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 51, 15 |
| Conread position: | 272-666 |
| Cow position: | chr29:803832-803427 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 273 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 47, 17 |
| Conread position: | 285-752 |
| Cow position: | chr29:39080197-39079709 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 326 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 17, 210 |
| Conread position: | 289-642 |
| Cow position: | chr29:19652621-19652981 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 247 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 13, 206 |
| Conread position: | 289-642 |
| Cow position: | chr29:23975346-23975709 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 246 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 13, 163 |
| Conread position: | 289-644 |
| Cow position: | chr29:20250672-20251034 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 13, 173 |
| Conread position: | 289-712 |
| Cow position: | chr29:7431703-7431265 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 296 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 13, 206 |
| Conread position: | 289-712 |
| Cow position: | chr29:26165305-26164872 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 301 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 13, 26 |
| Conread position: | 289-752 |
| Cow position: | chr29:40503466-40502980 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 319 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 20, 206 |
| Conread position: | 295-756 |
| Cow position: | chr29:104105-104571 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 165 |
| Conread position: | 296-641 |
| Cow position: | chr29:16109248-16109601 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 229 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 30, 307 |
| Conread position: | 296-666 |
| Cow position: | chr29:13577947-13578317 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 245 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 26, 196 |
| Conread position: | 296-684 |
| Cow position: | chr29:27250813-27250416 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 265 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 26, 195 |
| Conread position: | 296-684 |
| Cow position: | chr29:28061146-28060747 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 268 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 26, 319 |
| Conread position: | 301-642 |
| Cow position: | chr29:48950-48603 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 238 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 20, 193 |
| Conread position: | 301-642 |
| Cow position: | chr29:6266966-6266621 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 238 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 35, 193 |
| Conread position: | 301-644 |
| Cow position: | chr29:2841839-2841494 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 240 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 35, 193 |
| Conread position: | 301-712 |
| Cow position: | chr29:19623718-19623297 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 282 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 35, 274 |
| Conread position: | 302-727 |
| Cow position: | chr29:19893296-19893733 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 39 |
| Conread position: | 305-642 |
| Cow position: | chr29:21246098-21246442 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 231 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 31, 196 |
| Conread position: | 306-642 |
| Cow position: | chr29:34800270-34799937 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 237 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 81, 118 |
| Conread position: | 308-712 |
| Cow position: | chr29:43322092-43322510 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 280 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 12, 186 |
| Conread position: | 316-558 |
| Cow position: | chr29:34752140-34751904 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 64, 22 |
| Conread position: | 321-583 |
| Cow position: | chr29:45587751-45587484 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 57, 172 |
| Conread position: | 321-642 |
| Cow position: | chr29:38226542-38226874 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 232 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 14, 21 |
| Conread position: | 321-666 |
| Cow position: | chr29:32315589-32315939 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 65, 159 |
| Conread position: | 321-684 |
| Cow position: | chr29:15895299-15894932 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 249 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 129, 251 |
| Conread position: | 321-684 |
| Cow position: | chr29:15969594-15969232 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 247 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 66, 120 |
| Conread position: | 321-713 |
| Cow position: | chr29:32539358-32539762 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 277 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 66, 223 |
| Conread position: | 321-730 |
| Cow position: | chr29:2099393-2099817 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 288 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 48, 32 |
| Conread position: | 321-756 |
| Cow position: | chr29:4635413-4634969 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 29 |
| Conread position: | 322-650 |
| Cow position: | chr29:9644174-9643842 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 227 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 9, 253 |
| Conread position: | 322-728 |
| Cow position: | chr29:15950629-15950211 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 280 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 43, 159 |
| Conread position: | 324-651 |
| Cow position: | chr29:10648695-10648367 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 220 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 63, 169 |
| Conread position: | 328-623 |
| Cow position: | chr29:19906208-19906502 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 213 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 51, 42 |
| Conread position: | 328-728 |
| Cow position: | chr29:11841262-11841634 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 284 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 52, 86 |
| Conread position: | 329-720 |
| Cow position: | chr29:30811106-30811494 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 281 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 50, 152 |
| Conread position: | 330-642 |
| Cow position: | chr29:25932988-25932671 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 57, 163 |
| Conread position: | 330-684 |
| Cow position: | chr29:31121364-31121724 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 236 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 57, 203 |
| Conread position: | 346-733 |
| Cow position: | chr29:11048854-11049256 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 267 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 31, 200 |
| Conread position: | 346-756 |
| Cow position: | chr29:35196259-35196671 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 279 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 31, 112 |
| Conread position: | 351-735 |
| Cow position: | chr29:24199024-24198644 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 292 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 28, 119 |
| Conread position: | 356-642 |
| Cow position: | chr29:45459302-45459589 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 203 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 23, 217 |
| Conread position: | 361-732 |
| Cow position: | chr29:14013059-14013445 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 251 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 22, 374 |
| Conread position: | 361-732 |
| Cow position: | chr29:14073354-14072966 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 252 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 22, 376 |
| Conread position: | 364-642 |
| Cow position: | chr29:12796873-12796593 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 13, 42 |
| Conread position: | 364-728 |
| Cow position: | chr29:21543782-21543394 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 263 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 13, 121 |
| Conread position: | 364-756 |
| Cow position: | chr29:27041170-27040760 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 281 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 13, 94 |
| Conread position: | 369-684 |
| Cow position: | chr29:7840396-7840715 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 91, 5 |
| Conread position: | 385-642 |
| Cow position: | chr29:2689519-2689776 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 182 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 93, 105 |
| Conread position: | 471-677 |
| Cow position: | chr29:13853318-13853112 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 95, 24 |
| Conread position: | 471-733 |
| Cow position: | chr29:21427354-21427077 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 471-751 |
| Cow position: | chr29:34609241-34608958 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 208 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 162, 14 |
| Conread position: | 488-756 |
| Cow position: | chr29:2368179-2367900 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 209 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 46, 30 |
| Conread position: | 538-728 |
| Cow position: | chr29:11855368-11855567 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 107, 69 |
Show alignments to all cow chromosomes.