Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01C120006.5 | 
| Conread position: | 1-129 | 
| Cow position: | chr6:20495907-20496033 (view UCSC Genome Browser custom track) | 
| Alignm length: | 131 | 
| Alignm identity: | 106 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 32, 53 | 
| Conread position: | 16-128 | 
| Cow position: | chr6:525683-525797 (view UCSC Genome Browser custom track) | 
| Alignm length: | 115 | 
| Alignm identity: | 92 | 
| Alignm E-value: | 5e-22 | 
| Alignm gaps (pig, cow): | 16, 0 | 
| Conread position: | 269-642 | 
| Cow position: | chr6:3890035-3889648 (view UCSC Genome Browser custom track) | 
| Alignm length: | 392 | 
| Alignm identity: | 259 | 
| Alignm E-value: | 2e-35 | 
| Alignm gaps (pig, cow): | 33, 226 | 
| Conread position: | 271-675 | 
| Cow position: | chr6:27169032-27169445 (view UCSC Genome Browser custom track) | 
| Alignm length: | 417 | 
| Alignm identity: | 268 | 
| Alignm E-value: | 7e-35 | 
| Alignm gaps (pig, cow): | 51, 15 | 
| Conread position: | 271-756 | 
| Cow position: | chr6:2374166-2374663 (view UCSC Genome Browser custom track) | 
| Alignm length: | 508 | 
| Alignm identity: | 326 | 
| Alignm E-value: | 6e-34 | 
| Alignm gaps (pig, cow): | 51, 19 | 
| Conread position: | 289-641 | 
| Cow position: | chr6:8201204-8201563 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 244 | 
| Alignm E-value: | 4e-39 | 
| Alignm gaps (pig, cow): | 13, 206 | 
| Conread position: | 289-641 | 
| Cow position: | chr6:15281071-15280711 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 244 | 
| Alignm E-value: | 1e-39 | 
| Alignm gaps (pig, cow): | 13, 205 | 
| Conread position: | 289-642 | 
| Cow position: | chr6:913103-913460 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 246 | 
| Alignm E-value: | 4.00001e-40 | 
| Alignm gaps (pig, cow): | 13, 206 | 
| Conread position: | 289-642 | 
| Cow position: | chr6:36525517-36525874 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 257 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 13, 99 | 
| Conread position: | 289-642 | 
| Cow position: | chr6:55544855-55544495 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 242 | 
| Alignm E-value: | 9.99995e-41 | 
| Alignm gaps (pig, cow): | 13, 314 | 
| Conread position: | 289-642 | 
| Cow position: | chr6:65880332-65880698 (view UCSC Genome Browser custom track) | 
| Alignm length: | 368 | 
| Alignm identity: | 243 | 
| Alignm E-value: | 3e-36 | 
| Alignm gaps (pig, cow): | 13, 212 | 
| Conread position: | 289-684 | 
| Cow position: | chr6:21686374-21686765 (view UCSC Genome Browser custom track) | 
| Alignm length: | 403 | 
| Alignm identity: | 273 | 
| Alignm E-value: | 6.02558e-44 | 
| Alignm gaps (pig, cow): | 13, 63 | 
| Conread position: | 289-684 | 
| Cow position: | chr6:26671393-26670986 (view UCSC Genome Browser custom track) | 
| Alignm length: | 414 | 
| Alignm identity: | 267 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 33, 191 | 
| Conread position: | 289-712 | 
| Cow position: | chr6:3278478-3278041 (view UCSC Genome Browser custom track) | 
| Alignm length: | 442 | 
| Alignm identity: | 297 | 
| Alignm E-value: | 7.00649e-45 | 
| Alignm gaps (pig, cow): | 20, 119 | 
| Conread position: | 289-712 | 
| Cow position: | chr6:39437115-39437550 (view UCSC Genome Browser custom track) | 
| Alignm length: | 442 | 
| Alignm identity: | 294 | 
| Alignm E-value: | 1e-39 | 
| Alignm gaps (pig, cow): | 13, 206 | 
| Conread position: | 289-730 | 
| Cow position: | chr6:1823774-1823320 (view UCSC Genome Browser custom track) | 
| Alignm length: | 461 | 
| Alignm identity: | 300 | 
| Alignm E-value: | 8e-36 | 
| Alignm gaps (pig, cow): | 13, 205 | 
| Conread position: | 289-752 | 
| Cow position: | chr6:5951763-5951281 (view UCSC Genome Browser custom track) | 
| Alignm length: | 487 | 
| Alignm identity: | 320 | 
| Alignm E-value: | 4.00001e-41 | 
| Alignm gaps (pig, cow): | 13, 79 | 
| Conread position: | 296-582 | 
| Cow position: | chr6:6935646-6935353 (view UCSC Genome Browser custom track) | 
| Alignm length: | 294 | 
| Alignm identity: | 197 | 
| Alignm E-value: | 5e-32 | 
| Alignm gaps (pig, cow): | 26, 0 | 
| Conread position: | 296-582 | 
| Cow position: | chr6:41757505-41757214 (view UCSC Genome Browser custom track) | 
| Alignm length: | 292 | 
| Alignm identity: | 192 | 
| Alignm E-value: | 1e-29 | 
| Alignm gaps (pig, cow): | 91, 0 | 
| Conread position: | 296-666 | 
| Cow position: | chr6:28492032-28491656 (view UCSC Genome Browser custom track) | 
| Alignm length: | 380 | 
| Alignm identity: | 241 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 26, 44 | 
| Conread position: | 296-684 | 
| Cow position: | chr6:2554190-2554585 (view UCSC Genome Browser custom track) | 
| Alignm length: | 401 | 
| Alignm identity: | 262 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 26, 54 | 
| Conread position: | 296-684 | 
| Cow position: | chr6:7141986-7141594 (view UCSC Genome Browser custom track) | 
| Alignm length: | 399 | 
| Alignm identity: | 266 | 
| Alignm E-value: | 4.00001e-40 | 
| Alignm gaps (pig, cow): | 26, 75 | 
| Conread position: | 296-684 | 
| Cow position: | chr6:13978021-13978398 (view UCSC Genome Browser custom track) | 
| Alignm length: | 396 | 
| Alignm identity: | 259 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 6, 93 | 
| Conread position: | 296-684 | 
| Cow position: | chr6:34126830-34127226 (view UCSC Genome Browser custom track) | 
| Alignm length: | 401 | 
| Alignm identity: | 267 | 
| Alignm E-value: | 4.00001e-40 | 
| Alignm gaps (pig, cow): | 26, 306 | 
| Conread position: | 296-684 | 
| Cow position: | chr6:39907635-39908027 (view UCSC Genome Browser custom track) | 
| Alignm length: | 399 | 
| Alignm identity: | 259 | 
| Alignm E-value: | 7e-35 | 
| Alignm gaps (pig, cow): | 26, 165 | 
| Conread position: | 296-684 | 
| Cow position: | chr6:43617194-43617594 (view UCSC Genome Browser custom track) | 
| Alignm length: | 402 | 
| Alignm identity: | 259 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 26, 320 | 
| Conread position: | 296-684 | 
| Cow position: | chr6:45671748-45672142 (view UCSC Genome Browser custom track) | 
| Alignm length: | 400 | 
| Alignm identity: | 262 | 
| Alignm E-value: | 8e-36 | 
| Alignm gaps (pig, cow): | 26, 191 | 
| Conread position: | 296-684 | 
| Cow position: | chr6:68026260-68026659 (view UCSC Genome Browser custom track) | 
| Alignm length: | 402 | 
| Alignm identity: | 264 | 
| Alignm E-value: | 1e-37 | 
| Alignm gaps (pig, cow): | 26, 284 | 
| Conread position: | 296-730 | 
| Cow position: | chr6:332000-331537 (view UCSC Genome Browser custom track) | 
| Alignm length: | 464 | 
| Alignm identity: | 296 | 
| Alignm E-value: | 4e-30 | 
| Alignm gaps (pig, cow): | 26, 0 | 
| Conread position: | 296-730 | 
| Cow position: | chr6:57870525-57870072 (view UCSC Genome Browser custom track) | 
| Alignm length: | 455 | 
| Alignm identity: | 302 | 
| Alignm E-value: | 6.02558e-44 | 
| Alignm gaps (pig, cow): | 26, 306 | 
| Conread position: | 296-730 | 
| Cow position: | chr6:65822653-65822195 (view UCSC Genome Browser custom track) | 
| Alignm length: | 461 | 
| Alignm identity: | 291 | 
| Alignm E-value: | 3e-26 | 
| Alignm gaps (pig, cow): | 26, 321 | 
| Conread position: | 296-741 | 
| Cow position: | chr6:13103538-13104000 (view UCSC Genome Browser custom track) | 
| Alignm length: | 465 | 
| Alignm identity: | 300 | 
| Alignm E-value: | 3e-38 | 
| Alignm gaps (pig, cow): | 26, 132 | 
| Conread position: | 297-663 | 
| Cow position: | chr6:59478731-59478362 (view UCSC Genome Browser custom track) | 
| Alignm length: | 377 | 
| Alignm identity: | 256 | 
| Alignm E-value: | 9.99967e-42 | 
| Alignm gaps (pig, cow): | 85, 22 | 
| Conread position: | 301-583 | 
| Cow position: | chr6:52032-51745 (view UCSC Genome Browser custom track) | 
| Alignm length: | 291 | 
| Alignm identity: | 206 | 
| Alignm E-value: | 4e-39 | 
| Alignm gaps (pig, cow): | 35, 192 | 
| Conread position: | 301-642 | 
| Cow position: | chr6:15141685-15141344 (view UCSC Genome Browser custom track) | 
| Alignm length: | 349 | 
| Alignm identity: | 232 | 
| Alignm E-value: | 2e-33 | 
| Alignm gaps (pig, cow): | 86, 35 | 
| Conread position: | 305-572 | 
| Cow position: | chr6:65900420-65900148 (view UCSC Genome Browser custom track) | 
| Alignm length: | 275 | 
| Alignm identity: | 193 | 
| Alignm E-value: | 8e-36 | 
| Alignm gaps (pig, cow): | 25, 90 | 
| Conread position: | 305-684 | 
| Cow position: | chr6:17598794-17598402 (view UCSC Genome Browser custom track) | 
| Alignm length: | 398 | 
| Alignm identity: | 269 | 
| Alignm E-value: | 4.00001e-40 | 
| Alignm gaps (pig, cow): | 17, 193 | 
| Conread position: | 307-584 | 
| Cow position: | chr6:25357169-25357446 (view UCSC Genome Browser custom track) | 
| Alignm length: | 282 | 
| Alignm identity: | 203 | 
| Alignm E-value: | 1.99965e-42 | 
| Alignm gaps (pig, cow): | 80, 24 | 
| Conread position: | 312-728 | 
| Cow position: | chr6:2885742-2886140 (view UCSC Genome Browser custom track) | 
| Alignm length: | 420 | 
| Alignm identity: | 282 | 
| Alignm E-value: | 1e-38 | 
| Alignm gaps (pig, cow): | 224, 74 | 
| Conread position: | 316-722 | 
| Cow position: | chr6:52803923-52804331 (view UCSC Genome Browser custom track) | 
| Alignm length: | 423 | 
| Alignm identity: | 290 | 
| Alignm E-value: | 1.99965e-42 | 
| Alignm gaps (pig, cow): | 72, 5 | 
| Conread position: | 317-625 | 
| Cow position: | chr6:17045564-17045876 (view UCSC Genome Browser custom track) | 
| Alignm length: | 317 | 
| Alignm identity: | 219 | 
| Alignm E-value: | 3e-38 | 
| Alignm gaps (pig, cow): | 19, 178 | 
| Conread position: | 317-712 | 
| Cow position: | chr6:29310995-29311400 (view UCSC Genome Browser custom track) | 
| Alignm length: | 414 | 
| Alignm identity: | 278 | 
| Alignm E-value: | 3e-37 | 
| Alignm gaps (pig, cow): | 19, 178 | 
| Conread position: | 318-676 | 
| Cow position: | chr6:40274762-40275128 (view UCSC Genome Browser custom track) | 
| Alignm length: | 369 | 
| Alignm identity: | 243 | 
| Alignm E-value: | 8e-36 | 
| Alignm gaps (pig, cow): | 68, 153 | 
| Conread position: | 319-573 | 
| Cow position: | chr6:66194469-66194216 (view UCSC Genome Browser custom track) | 
| Alignm length: | 258 | 
| Alignm identity: | 167 | 
| Alignm E-value: | 5e-21 | 
| Alignm gaps (pig, cow): | 61, 25 | 
| Conread position: | 320-592 | 
| Cow position: | chr6:24238556-24238830 (view UCSC Genome Browser custom track) | 
| Alignm length: | 280 | 
| Alignm identity: | 203 | 
| Alignm E-value: | 4.00001e-41 | 
| Alignm gaps (pig, cow): | 67, 31 | 
| Conread position: | 320-642 | 
| Cow position: | chr6:65908938-65909258 (view UCSC Genome Browser custom track) | 
| Alignm length: | 328 | 
| Alignm identity: | 220 | 
| Alignm E-value: | 6e-34 | 
| Alignm gaps (pig, cow): | 62, 142 | 
| Conread position: | 320-756 | 
| Cow position: | chr6:1384337-1383890 (view UCSC Genome Browser custom track) | 
| Alignm length: | 453 | 
| Alignm identity: | 312 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 59, 172 | 
| Conread position: | 320-756 | 
| Cow position: | chr6:6566117-6566568 (view UCSC Genome Browser custom track) | 
| Alignm length: | 454 | 
| Alignm identity: | 304 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 67, 436 | 
| Conread position: | 321-638 | 
| Cow position: | chr6:21971183-21971501 (view UCSC Genome Browser custom track) | 
| Alignm length: | 324 | 
| Alignm identity: | 219 | 
| Alignm E-value: | 3e-36 | 
| Alignm gaps (pig, cow): | 66, 92 | 
| Conread position: | 321-641 | 
| Cow position: | chr6:65841095-65841426 (view UCSC Genome Browser custom track) | 
| Alignm length: | 334 | 
| Alignm identity: | 223 | 
| Alignm E-value: | 2e-31 | 
| Alignm gaps (pig, cow): | 66, 170 | 
| Conread position: | 321-642 | 
| Cow position: | chr6:12093347-12093031 (view UCSC Genome Browser custom track) | 
| Alignm length: | 328 | 
| Alignm identity: | 226 | 
| Alignm E-value: | 8e-36 | 
| Alignm gaps (pig, cow): | 56, 85 | 
| Conread position: | 321-642 | 
| Cow position: | chr6:20561603-20561278 (view UCSC Genome Browser custom track) | 
| Alignm length: | 330 | 
| Alignm identity: | 224 | 
| Alignm E-value: | 9e-37 | 
| Alignm gaps (pig, cow): | 65, 172 | 
| Conread position: | 321-685 | 
| Cow position: | chr6:44151036-44150679 (view UCSC Genome Browser custom track) | 
| Alignm length: | 371 | 
| Alignm identity: | 244 | 
| Alignm E-value: | 5e-32 | 
| Alignm gaps (pig, cow): | 212, 65 | 
| Conread position: | 321-703 | 
| Cow position: | chr6:3488886-3488499 (view UCSC Genome Browser custom track) | 
| Alignm length: | 397 | 
| Alignm identity: | 265 | 
| Alignm E-value: | 8e-36 | 
| Alignm gaps (pig, cow): | 66, 141 | 
| Conread position: | 321-730 | 
| Cow position: | chr6:50497944-50497527 (view UCSC Genome Browser custom track) | 
| Alignm length: | 428 | 
| Alignm identity: | 280 | 
| Alignm E-value: | 5e-32 | 
| Alignm gaps (pig, cow): | 65, 102 | 
| Conread position: | 321-751 | 
| Cow position: | chr6:6619892-6619481 (view UCSC Genome Browser custom track) | 
| Alignm length: | 441 | 
| Alignm identity: | 309 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 135, 29 | 
| Conread position: | 321-756 | 
| Cow position: | chr6:35433051-35433501 (view UCSC Genome Browser custom track) | 
| Alignm length: | 460 | 
| Alignm identity: | 308 | 
| Alignm E-value: | 4.00001e-41 | 
| Alignm gaps (pig, cow): | 40, 73 | 
| Conread position: | 322-740 | 
| Cow position: | chr6:60384504-60384927 (view UCSC Genome Browser custom track) | 
| Alignm length: | 433 | 
| Alignm identity: | 273 | 
| Alignm E-value: | 3e-26 | 
| Alignm gaps (pig, cow): | 58, 25 | 
| Conread position: | 323-528 | 
| Cow position: | chr6:17100395-17100188 (view UCSC Genome Browser custom track) | 
| Alignm length: | 209 | 
| Alignm identity: | 155 | 
| Alignm E-value: | 7e-35 | 
| Alignm gaps (pig, cow): | 64, 158 | 
| Conread position: | 323-644 | 
| Cow position: | chr6:51190057-51190373 (view UCSC Genome Browser custom track) | 
| Alignm length: | 325 | 
| Alignm identity: | 208 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 64, 74 | 
| Conread position: | 323-728 | 
| Cow position: | chr6:42360157-42359751 (view UCSC Genome Browser custom track) | 
| Alignm length: | 423 | 
| Alignm identity: | 280 | 
| Alignm E-value: | 1e-30 | 
| Alignm gaps (pig, cow): | 127, 22 | 
| Conread position: | 328-562 | 
| Cow position: | chr6:28106251-28106016 (view UCSC Genome Browser custom track) | 
| Alignm length: | 239 | 
| Alignm identity: | 164 | 
| Alignm E-value: | 9e-27 | 
| Alignm gaps (pig, cow): | 59, 17 | 
| Conread position: | 328-728 | 
| Cow position: | chr6:10054138-10054542 (view UCSC Genome Browser custom track) | 
| Alignm length: | 419 | 
| Alignm identity: | 294 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 51, 13 | 
| Conread position: | 330-665 | 
| Cow position: | chr6:30478614-30478948 (view UCSC Genome Browser custom track) | 
| Alignm length: | 343 | 
| Alignm identity: | 231 | 
| Alignm E-value: | 7e-35 | 
| Alignm gaps (pig, cow): | 52, 194 | 
| Conread position: | 330-673 | 
| Cow position: | chr6:38231794-38232142 (view UCSC Genome Browser custom track) | 
| Alignm length: | 353 | 
| Alignm identity: | 241 | 
| Alignm E-value: | 4.00001e-41 | 
| Alignm gaps (pig, cow): | 50, 155 | 
| Conread position: | 330-728 | 
| Cow position: | chr6:6476935-6476525 (view UCSC Genome Browser custom track) | 
| Alignm length: | 418 | 
| Alignm identity: | 284 | 
| Alignm E-value: | 9.99967e-42 | 
| Alignm gaps (pig, cow): | 50, 82 | 
| Conread position: | 334-712 | 
| Cow position: | chr6:27530479-27530094 (view UCSC Genome Browser custom track) | 
| Alignm length: | 393 | 
| Alignm identity: | 261 | 
| Alignm E-value: | 6e-34 | 
| Alignm gaps (pig, cow): | 40, 11 | 
| Conread position: | 339-756 | 
| Cow position: | chr6:35421036-35420632 (view UCSC Genome Browser custom track) | 
| Alignm length: | 431 | 
| Alignm identity: | 287 | 
| Alignm E-value: | 4e-29 | 
| Alignm gaps (pig, cow): | 23, 11 | 
| Conread position: | 341-712 | 
| Cow position: | chr6:40314439-40314811 (view UCSC Genome Browser custom track) | 
| Alignm length: | 383 | 
| Alignm identity: | 248 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 191, 122 | 
| Conread position: | 345-733 | 
| Cow position: | chr6:10559106-10558726 (view UCSC Genome Browser custom track) | 
| Alignm length: | 400 | 
| Alignm identity: | 254 | 
| Alignm E-value: | 5e-21 | 
| Alignm gaps (pig, cow): | 118, 76 | 
| Conread position: | 346-728 | 
| Cow position: | chr6:19453464-19453852 (view UCSC Genome Browser custom track) | 
| Alignm length: | 400 | 
| Alignm identity: | 268 | 
| Alignm E-value: | 6e-34 | 
| Alignm gaps (pig, cow): | 31, 60 | 
| Conread position: | 346-728 | 
| Cow position: | chr6:59919743-59919349 (view UCSC Genome Browser custom track) | 
| Alignm length: | 404 | 
| Alignm identity: | 274 | 
| Alignm E-value: | 7e-35 | 
| Alignm gaps (pig, cow): | 31, 112 | 
| Conread position: | 346-728 | 
| Cow position: | chr6:68362784-68362390 (view UCSC Genome Browser custom track) | 
| Alignm length: | 399 | 
| Alignm identity: | 270 | 
| Alignm E-value: | 1.99965e-42 | 
| Alignm gaps (pig, cow): | 34, 227 | 
| Conread position: | 347-645 | 
| Cow position: | chr6:50138160-50138451 (view UCSC Genome Browser custom track) | 
| Alignm length: | 305 | 
| Alignm identity: | 204 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 33, 17 | 
| Conread position: | 351-730 | 
| Cow position: | chr6:1405696-1405307 (view UCSC Genome Browser custom track) | 
| Alignm length: | 394 | 
| Alignm identity: | 259 | 
| Alignm E-value: | 8e-36 | 
| Alignm gaps (pig, cow): | 35, 108 | 
| Conread position: | 352-707 | 
| Cow position: | chr6:65927482-65927842 (view UCSC Genome Browser custom track) | 
| Alignm length: | 372 | 
| Alignm identity: | 251 | 
| Alignm E-value: | 2e-31 | 
| Alignm gaps (pig, cow): | 35, 111 | 
| Conread position: | 353-642 | 
| Cow position: | chr6:701490-701788 (view UCSC Genome Browser custom track) | 
| Alignm length: | 300 | 
| Alignm identity: | 211 | 
| Alignm E-value: | 4e-39 | 
| Alignm gaps (pig, cow): | 28, 141 | 
| Conread position: | 353-642 | 
| Cow position: | chr6:47043892-47043600 (view UCSC Genome Browser custom track) | 
| Alignm length: | 296 | 
| Alignm identity: | 203 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 34, 72 | 
| Conread position: | 353-712 | 
| Cow position: | chr6:30275643-30275269 (view UCSC Genome Browser custom track) | 
| Alignm length: | 381 | 
| Alignm identity: | 250 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 16, 67 | 
| Conread position: | 353-743 | 
| Cow position: | chr6:42564485-42564888 (view UCSC Genome Browser custom track) | 
| Alignm length: | 407 | 
| Alignm identity: | 297 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 75 | 
| Conread position: | 356-642 | 
| Cow position: | chr6:28274529-28274815 (view UCSC Genome Browser custom track) | 
| Alignm length: | 294 | 
| Alignm identity: | 200 | 
| Alignm E-value: | 4e-30 | 
| Alignm gaps (pig, cow): | 31, 136 | 
| Conread position: | 356-666 | 
| Cow position: | chr6:63198595-63198286 (view UCSC Genome Browser custom track) | 
| Alignm length: | 316 | 
| Alignm identity: | 230 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 27, 128 | 
| Conread position: | 356-730 | 
| Cow position: | chr6:27468799-27469183 (view UCSC Genome Browser custom track) | 
| Alignm length: | 391 | 
| Alignm identity: | 259 | 
| Alignm E-value: | 5e-32 | 
| Alignm gaps (pig, cow): | 18, 137 | 
| Conread position: | 357-642 | 
| Cow position: | chr6:64714658-64714947 (view UCSC Genome Browser custom track) | 
| Alignm length: | 293 | 
| Alignm identity: | 194 | 
| Alignm E-value: | 9e-27 | 
| Alignm gaps (pig, cow): | 21, 60 | 
| Conread position: | 362-730 | 
| Cow position: | chr6:11353285-11353673 (view UCSC Genome Browser custom track) | 
| Alignm length: | 391 | 
| Alignm identity: | 275 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 90, 121 | 
| Conread position: | 363-684 | 
| Cow position: | chr6:58409360-58409035 (view UCSC Genome Browser custom track) | 
| Alignm length: | 331 | 
| Alignm identity: | 218 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 23, 99 | 
| Conread position: | 364-666 | 
| Cow position: | chr6:11278144-11277843 (view UCSC Genome Browser custom track) | 
| Alignm length: | 313 | 
| Alignm identity: | 213 | 
| Alignm E-value: | 1e-27 | 
| Alignm gaps (pig, cow): | 16, 49 | 
| Conread position: | 364-756 | 
| Cow position: | chr6:525809-526201 (view UCSC Genome Browser custom track) | 
| Alignm length: | 407 | 
| Alignm identity: | 276 | 
| Alignm E-value: | 1e-39 | 
| Alignm gaps (pig, cow): | 8, 30 | 
| Conread position: | 365-572 | 
| Cow position: | chr6:66231365-66231575 (view UCSC Genome Browser custom track) | 
| Alignm length: | 212 | 
| Alignm identity: | 143 | 
| Alignm E-value: | 5e-21 | 
| Alignm gaps (pig, cow): | 22, 126 | 
| Conread position: | 371-752 | 
| Cow position: | chr6:8761744-8761345 (view UCSC Genome Browser custom track) | 
| Alignm length: | 403 | 
| Alignm identity: | 268 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 8, 121 | 
| Conread position: | 376-728 | 
| Cow position: | chr6:34203075-34203436 (view UCSC Genome Browser custom track) | 
| Alignm length: | 366 | 
| Alignm identity: | 237 | 
| Alignm E-value: | 4e-29 | 
| Alignm gaps (pig, cow): | 80, 114 | 
| Conread position: | 378-728 | 
| Cow position: | chr6:28474274-28474631 (view UCSC Genome Browser custom track) | 
| Alignm length: | 366 | 
| Alignm identity: | 262 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 74, 140 | 
| Conread position: | 378-733 | 
| Cow position: | chr6:42926945-42927319 (view UCSC Genome Browser custom track) | 
| Alignm length: | 378 | 
| Alignm identity: | 249 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 78, 170 | 
| Conread position: | 381-663 | 
| Cow position: | chr6:6542315-6542590 (view UCSC Genome Browser custom track) | 
| Alignm length: | 287 | 
| Alignm identity: | 197 | 
| Alignm E-value: | 1e-30 | 
| Alignm gaps (pig, cow): | 69, 156 | 
| Conread position: | 412-647 | 
| Cow position: | chr6:12095751-12095518 (view UCSC Genome Browser custom track) | 
| Alignm length: | 239 | 
| Alignm identity: | 174 | 
| Alignm E-value: | 2e-35 | 
| Alignm gaps (pig, cow): | 44, 84 | 
| Conread position: | 413-751 | 
| Cow position: | chr6:20496310-20496652 (view UCSC Genome Browser custom track) | 
| Alignm length: | 352 | 
| Alignm identity: | 268 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 40, 51 | 
| Conread position: | 421-716 | 
| Cow position: | chr6:31569319-31569018 (view UCSC Genome Browser custom track) | 
| Alignm length: | 309 | 
| Alignm identity: | 213 | 
| Alignm E-value: | 2e-31 | 
| Alignm gaps (pig, cow): | 35, 66 | 
| Conread position: | 471-728 | 
| Cow position: | chr6:37115799-37116068 (view UCSC Genome Browser custom track) | 
| Alignm length: | 275 | 
| Alignm identity: | 194 | 
| Alignm E-value: | 3e-26 | 
| Alignm gaps (pig, cow): | 62, 16 | 
| Conread position: | 482-756 | 
| Cow position: | chr6:59741379-59741087 (view UCSC Genome Browser custom track) | 
| Alignm length: | 296 | 
| Alignm identity: | 209 | 
| Alignm E-value: | 2e-32 | 
| Alignm gaps (pig, cow): | 20, 93 | 
| Conread position: | 538-756 | 
| Cow position: | chr6:15476014-15476240 (view UCSC Genome Browser custom track) | 
| Alignm length: | 232 | 
| Alignm identity: | 164 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 108, 31 | 
| Conread position: | 549-756 | 
| Cow position: | chr6:10630205-10630423 (view UCSC Genome Browser custom track) | 
| Alignm length: | 219 | 
| Alignm identity: | 155 | 
| Alignm E-value: | 8e-26 | 
| Alignm gaps (pig, cow): | 90, 0 | 
Show alignments to all cow chromosomes.
