Cow genome map

Conread name: Ss1.1-LyN1-MLN01C120006.5

Conread position: 1-129
Cow position: chr6:20495907-20496033 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 106
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 32, 53

Conread position: 16-128
Cow position: chr6:525683-525797 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 92
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 16, 0

Conread position: 269-642
Cow position: chr6:3890035-3889648 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 259
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 33, 226

Conread position: 271-675
Cow position: chr6:27169032-27169445 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 268
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 51, 15

Conread position: 271-756
Cow position: chr6:2374166-2374663 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 326
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 51, 19

Conread position: 289-641
Cow position: chr6:8201204-8201563 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 244
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 13, 206

Conread position: 289-641
Cow position: chr6:15281071-15280711 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 244
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 13, 205

Conread position: 289-642
Cow position: chr6:913103-913460 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 246
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 13, 206

Conread position: 289-642
Cow position: chr6:36525517-36525874 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 99

Conread position: 289-642
Cow position: chr6:55544855-55544495 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 242
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 13, 314

Conread position: 289-642
Cow position: chr6:65880332-65880698 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 243
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 13, 212

Conread position: 289-684
Cow position: chr6:21686374-21686765 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 273
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 13, 63

Conread position: 289-684
Cow position: chr6:26671393-26670986 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 267
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 33, 191

Conread position: 289-712
Cow position: chr6:3278478-3278041 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 297
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 20, 119

Conread position: 289-712
Cow position: chr6:39437115-39437550 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 294
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 13, 206

Conread position: 289-730
Cow position: chr6:1823774-1823320 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 300
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 13, 205

Conread position: 289-752
Cow position: chr6:5951763-5951281 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 320
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 13, 79

Conread position: 296-582
Cow position: chr6:6935646-6935353 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 197
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 26, 0

Conread position: 296-582
Cow position: chr6:41757505-41757214 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 192
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 91, 0

Conread position: 296-666
Cow position: chr6:28492032-28491656 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 241
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 26, 44

Conread position: 296-684
Cow position: chr6:2554190-2554585 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 262
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 26, 54

Conread position: 296-684
Cow position: chr6:7141986-7141594 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 266
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 26, 75

Conread position: 296-684
Cow position: chr6:13978021-13978398 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 259
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 6, 93

Conread position: 296-684
Cow position: chr6:34126830-34127226 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 267
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 26, 306

Conread position: 296-684
Cow position: chr6:39907635-39908027 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 259
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 26, 165

Conread position: 296-684
Cow position: chr6:43617194-43617594 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 259
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 26, 320

Conread position: 296-684
Cow position: chr6:45671748-45672142 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 262
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 26, 191

Conread position: 296-684
Cow position: chr6:68026260-68026659 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 264
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 26, 284

Conread position: 296-730
Cow position: chr6:332000-331537 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 296
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 26, 0

Conread position: 296-730
Cow position: chr6:57870525-57870072 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 302
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 26, 306

Conread position: 296-730
Cow position: chr6:65822653-65822195 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 291
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 26, 321

Conread position: 296-741
Cow position: chr6:13103538-13104000 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 300
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 26, 132

Conread position: 297-663
Cow position: chr6:59478731-59478362 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 256
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 85, 22

Conread position: 301-583
Cow position: chr6:52032-51745 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 206
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 35, 192

Conread position: 301-642
Cow position: chr6:15141685-15141344 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 232
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 86, 35

Conread position: 305-572
Cow position: chr6:65900420-65900148 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 193
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 25, 90

Conread position: 305-684
Cow position: chr6:17598794-17598402 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 269
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 17, 193

Conread position: 307-584
Cow position: chr6:25357169-25357446 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 203
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 80, 24

Conread position: 312-728
Cow position: chr6:2885742-2886140 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 282
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 224, 74

Conread position: 316-722
Cow position: chr6:52803923-52804331 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 290
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 72, 5

Conread position: 317-625
Cow position: chr6:17045564-17045876 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 219
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 19, 178

Conread position: 317-712
Cow position: chr6:29310995-29311400 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 278
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 19, 178

Conread position: 318-676
Cow position: chr6:40274762-40275128 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 243
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 68, 153

Conread position: 319-573
Cow position: chr6:66194469-66194216 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 167
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 61, 25

Conread position: 320-592
Cow position: chr6:24238556-24238830 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 203
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 67, 31

Conread position: 320-642
Cow position: chr6:65908938-65909258 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 220
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 62, 142

Conread position: 320-756
Cow position: chr6:1384337-1383890 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 172

Conread position: 320-756
Cow position: chr6:6566117-6566568 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 436

Conread position: 321-638
Cow position: chr6:21971183-21971501 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 219
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 66, 92

Conread position: 321-641
Cow position: chr6:65841095-65841426 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 223
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 66, 170

Conread position: 321-642
Cow position: chr6:12093347-12093031 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 226
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 56, 85

Conread position: 321-642
Cow position: chr6:20561603-20561278 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 224
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 65, 172

Conread position: 321-685
Cow position: chr6:44151036-44150679 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 244
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 212, 65

Conread position: 321-703
Cow position: chr6:3488886-3488499 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 265
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 66, 141

Conread position: 321-730
Cow position: chr6:50497944-50497527 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 280
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 65, 102

Conread position: 321-751
Cow position: chr6:6619892-6619481 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 29

Conread position: 321-756
Cow position: chr6:35433051-35433501 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 308
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 40, 73

Conread position: 322-740
Cow position: chr6:60384504-60384927 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 273
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 58, 25

Conread position: 323-528
Cow position: chr6:17100395-17100188 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 155
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 64, 158

Conread position: 323-644
Cow position: chr6:51190057-51190373 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 208
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 64, 74

Conread position: 323-728
Cow position: chr6:42360157-42359751 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 280
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 127, 22

Conread position: 328-562
Cow position: chr6:28106251-28106016 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 164
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 59, 17

Conread position: 328-728
Cow position: chr6:10054138-10054542 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 13

Conread position: 330-665
Cow position: chr6:30478614-30478948 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 231
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 52, 194

Conread position: 330-673
Cow position: chr6:38231794-38232142 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 241
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 50, 155

Conread position: 330-728
Cow position: chr6:6476935-6476525 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 284
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 50, 82

Conread position: 334-712
Cow position: chr6:27530479-27530094 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 261
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 40, 11

Conread position: 339-756
Cow position: chr6:35421036-35420632 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 287
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 23, 11

Conread position: 341-712
Cow position: chr6:40314439-40314811 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 248
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 191, 122

Conread position: 345-733
Cow position: chr6:10559106-10558726 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 254
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 118, 76

Conread position: 346-728
Cow position: chr6:19453464-19453852 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 268
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 31, 60

Conread position: 346-728
Cow position: chr6:59919743-59919349 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 274
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 31, 112

Conread position: 346-728
Cow position: chr6:68362784-68362390 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 270
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 34, 227

Conread position: 347-645
Cow position: chr6:50138160-50138451 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 204
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 33, 17

Conread position: 351-730
Cow position: chr6:1405696-1405307 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 259
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 35, 108

Conread position: 352-707
Cow position: chr6:65927482-65927842 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 251
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 35, 111

Conread position: 353-642
Cow position: chr6:701490-701788 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 211
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 28, 141

Conread position: 353-642
Cow position: chr6:47043892-47043600 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 203
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 34, 72

Conread position: 353-712
Cow position: chr6:30275643-30275269 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 250
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 16, 67

Conread position: 353-743
Cow position: chr6:42564485-42564888 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 75

Conread position: 356-642
Cow position: chr6:28274529-28274815 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 200
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 31, 136

Conread position: 356-666
Cow position: chr6:63198595-63198286 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 128

Conread position: 356-730
Cow position: chr6:27468799-27469183 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 259
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 18, 137

Conread position: 357-642
Cow position: chr6:64714658-64714947 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 194
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 21, 60

Conread position: 362-730
Cow position: chr6:11353285-11353673 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 121

Conread position: 363-684
Cow position: chr6:58409360-58409035 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 218
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 23, 99

Conread position: 364-666
Cow position: chr6:11278144-11277843 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 213
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 16, 49

Conread position: 364-756
Cow position: chr6:525809-526201 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 276
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 8, 30

Conread position: 365-572
Cow position: chr6:66231365-66231575 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 143
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 22, 126

Conread position: 371-752
Cow position: chr6:8761744-8761345 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 268
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 8, 121

Conread position: 376-728
Cow position: chr6:34203075-34203436 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 237
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 80, 114

Conread position: 378-728
Cow position: chr6:28474274-28474631 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 140

Conread position: 378-733
Cow position: chr6:42926945-42927319 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 249
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 78, 170

Conread position: 381-663
Cow position: chr6:6542315-6542590 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 197
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 69, 156

Conread position: 412-647
Cow position: chr6:12095751-12095518 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 174
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 44, 84

Conread position: 413-751
Cow position: chr6:20496310-20496652 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 51

Conread position: 421-716
Cow position: chr6:31569319-31569018 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 213
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 35, 66

Conread position: 471-728
Cow position: chr6:37115799-37116068 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 194
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 62, 16

Conread position: 482-756
Cow position: chr6:59741379-59741087 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 209
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 20, 93

Conread position: 538-756
Cow position: chr6:15476014-15476240 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 164
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 108, 31

Conread position: 549-756
Cow position: chr6:10630205-10630423 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 155
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 90, 0

Show alignments to all cow chromosomes.