Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01C120006.5 |
| Conread position: | 287-684 |
| Cow position: | chr8:37931045-37931449 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 263 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 99, 314 |
| Conread position: | 289-642 |
| Cow position: | chr8:25522149-25522507 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 243 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 20, 62 |
| Conread position: | 289-642 |
| Cow position: | chr8:32319798-32319437 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 247 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 13, 206 |
| Conread position: | 289-642 |
| Cow position: | chr8:38390121-38390476 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 244 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 13, 48 |
| Conread position: | 289-642 |
| Cow position: | chr8:59263143-59262785 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 238 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 13, 204 |
| Conread position: | 289-644 |
| Cow position: | chr8:60059953-60060314 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 248 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 13, 206 |
| Conread position: | 289-665 |
| Cow position: | chr8:8402450-8402068 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 254 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 13, 205 |
| Conread position: | 289-712 |
| Cow position: | chr8:45795993-45795557 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 288 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 13, 147 |
| Conread position: | 289-730 |
| Cow position: | chr8:19328704-19329164 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 303 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 13, 206 |
| Conread position: | 289-752 |
| Cow position: | chr8:23770389-23770871 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 205 |
| Conread position: | 289-752 |
| Cow position: | chr8:25407216-25407681 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 313 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 13, 63 |
| Conread position: | 293-712 |
| Cow position: | chr8:50289390-50288964 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 283 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 16, 23 |
| Conread position: | 295-642 |
| Cow position: | chr8:5015946-5016291 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 237 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 47, 78 |
| Conread position: | 296-620 |
| Cow position: | chr8:6065960-6065636 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 222 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 26, 165 |
| Conread position: | 296-662 |
| Cow position: | chr8:37657504-37657140 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 241 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 26, 165 |
| Conread position: | 296-666 |
| Cow position: | chr8:8518817-8518445 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 250 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 26, 165 |
| Conread position: | 296-666 |
| Cow position: | chr8:26007006-26006632 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 27, 192 |
| Conread position: | 296-675 |
| Cow position: | chr8:1318796-1319189 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 260 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 6, 20 |
| Conread position: | 296-684 |
| Cow position: | chr8:9274777-9275174 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 264 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 26, 281 |
| Conread position: | 296-684 |
| Cow position: | chr8:12504758-12505152 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 262 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 6, 44 |
| Conread position: | 296-684 |
| Cow position: | chr8:32439685-32439289 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 261 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 26, 318 |
| Conread position: | 296-684 |
| Cow position: | chr8:47070052-47069652 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 266 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 30, 320 |
| Conread position: | 296-712 |
| Cow position: | chr8:22572538-22572108 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 289 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 6, 20 |
| Conread position: | 296-730 |
| Cow position: | chr8:46945372-46944921 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 303 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 26, 198 |
| Conread position: | 296-742 |
| Cow position: | chr8:9735006-9735458 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 292 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 91, 317 |
| Conread position: | 296-750 |
| Cow position: | chr8:2885508-2885973 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 308 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 26, 166 |
| Conread position: | 296-756 |
| Cow position: | chr8:10748141-10748615 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 311 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 26, 191 |
| Conread position: | 301-638 |
| Cow position: | chr8:19174003-19173665 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 230 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 35, 112 |
| Conread position: | 301-642 |
| Cow position: | chr8:4686157-4686501 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 238 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 35, 193 |
| Conread position: | 301-642 |
| Cow position: | chr8:33588140-33588487 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 35, 193 |
| Conread position: | 301-752 |
| Cow position: | chr8:19050249-19050712 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 305 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 35, 193 |
| Conread position: | 304-567 |
| Cow position: | chr8:48370793-48371068 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 70, 195 |
| Conread position: | 304-641 |
| Cow position: | chr8:17310790-17311126 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 232 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 18, 33 |
| Conread position: | 305-644 |
| Cow position: | chr8:47662560-47662216 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 17, 188 |
| Conread position: | 307-704 |
| Cow position: | chr8:44713541-44713129 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 289 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 37, 42 |
| Conread position: | 308-560 |
| Cow position: | chr8:25777105-25776848 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 14, 185 |
| Conread position: | 308-642 |
| Cow position: | chr8:44244802-44244466 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 28 |
| Conread position: | 308-666 |
| Cow position: | chr8:8910005-8910354 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 28, 155 |
| Conread position: | 308-730 |
| Cow position: | chr8:29441058-29440623 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 290 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 28, 186 |
| Conread position: | 315-742 |
| Cow position: | chr8:11821091-11821531 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 289 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 64, 367 |
| Conread position: | 315-744 |
| Cow position: | chr8:8904718-8904303 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 305 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 141, 54 |
| Conread position: | 315-756 |
| Cow position: | chr8:46222538-46222092 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 99 |
| Conread position: | 320-677 |
| Cow position: | chr8:44693090-44693438 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 250 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 60, 29 |
| Conread position: | 320-756 |
| Cow position: | chr8:11801025-11801470 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 298 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 148, 67 |
| Conread position: | 321-571 |
| Cow position: | chr8:25542381-25542633 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 187 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 59, 135 |
| Conread position: | 321-622 |
| Cow position: | chr8:42658677-42658375 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 216 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 58, 248 |
| Conread position: | 321-642 |
| Cow position: | chr8:61198333-61198007 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 66, 173 |
| Conread position: | 321-660 |
| Cow position: | chr8:9540706-9540363 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 224 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 60, 180 |
| Conread position: | 321-665 |
| Cow position: | chr8:3857229-3856881 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 238 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 58, 172 |
| Conread position: | 321-684 |
| Cow position: | chr8:27578193-27578562 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 248 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 65, 150 |
| Conread position: | 321-730 |
| Cow position: | chr8:8656432-8656007 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 275 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 321-733 |
| Cow position: | chr8:36636759-36636331 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 285 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 63, 172 |
| Conread position: | 321-733 |
| Cow position: | chr8:36637874-36637446 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 285 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 63, 172 |
| Conread position: | 321-756 |
| Cow position: | chr8:27984018-27983555 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 310 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 58, 227 |
| Conread position: | 323-728 |
| Cow position: | chr8:12664237-12663812 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 257 |
| Conread position: | 324-684 |
| Cow position: | chr8:42467190-42467533 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 243 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 128, 45 |
| Conread position: | 324-756 |
| Cow position: | chr8:13735437-13735885 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 170 |
| Conread position: | 325-578 |
| Cow position: | chr8:13808115-13808367 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 198 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 13, 77 |
| Conread position: | 330-712 |
| Cow position: | chr8:49214221-49214613 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 264 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 48, 163 |
| Conread position: | 330-730 |
| Cow position: | chr8:47074062-47074478 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 271 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 50, 151 |
| Conread position: | 333-684 |
| Cow position: | chr8:32632219-32631871 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 224 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 207, 124 |
| Conread position: | 334-728 |
| Cow position: | chr8:32930303-32930717 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 282 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 43, 12 |
| Conread position: | 345-622 |
| Cow position: | chr8:44077212-44076931 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 189 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 42, 147 |
| Conread position: | 345-666 |
| Cow position: | chr8:47884834-47885168 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 38, 205 |
| Conread position: | 346-583 |
| Cow position: | chr8:8596086-8595844 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 31, 120 |
| Conread position: | 346-666 |
| Cow position: | chr8:45317312-45316993 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 104, 228 |
| Conread position: | 346-728 |
| Cow position: | chr8:47670266-47670662 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 271 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 31, 197 |
| Conread position: | 346-745 |
| Cow position: | chr8:11757530-11757927 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 263 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 36, 112 |
| Conread position: | 346-756 |
| Cow position: | chr8:45448260-45448683 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 286 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 31, 69 |
| Conread position: | 346-756 |
| Cow position: | chr8:53427145-53427561 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 290 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 34, 10 |
| Conread position: | 347-571 |
| Cow position: | chr8:46633580-46633356 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 47, 117 |
| Conread position: | 353-626 |
| Cow position: | chr8:27924938-27925216 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 202 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 24, 222 |
| Conread position: | 353-730 |
| Cow position: | chr8:10743801-10743422 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 262 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 112, 36 |
| Conread position: | 354-684 |
| Cow position: | chr8:38579481-38579137 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 245 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 9, 50 |
| Conread position: | 356-730 |
| Cow position: | chr8:24916514-24916129 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 266 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 31, 106 |
| Conread position: | 358-666 |
| Cow position: | chr8:1154487-1154173 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 16, 241 |
| Conread position: | 359-593 |
| Cow position: | chr8:33429740-33429976 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 21, 47 |
| Conread position: | 385-730 |
| Cow position: | chr8:39196367-39196007 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 246 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 80, 106 |
| Conread position: | 411-756 |
| Cow position: | chr8:24876839-24876471 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 253 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 30, 242 |
| Conread position: | 413-728 |
| Cow position: | chr8:61035476-61035159 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 128, 43 |
| Conread position: | 440-756 |
| Cow position: | chr8:23766483-23766158 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 16, 249 |
| Conread position: | 468-642 |
| Cow position: | chr8:14929057-14928883 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 65, 20 |
| Conread position: | 488-751 |
| Cow position: | chr8:15688197-15687922 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 48, 55 |
| Conread position: | 559-756 |
| Cow position: | chr8:13808628-13808836 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 90, 36 |
Show alignments to all cow chromosomes.