Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01D030025.5 |
| Conread position: | 13-344 |
| Cow position: | chr1:101149991-101149668 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 11, 141 |
| Conread position: | 13-377 |
| Cow position: | chr1:88635530-88635167 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 11, 141 |
| Conread position: | 13-440 |
| Cow position: | chr1:11291947-11292366 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 264 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 11, 82 |
| Conread position: | 13-450 |
| Cow position: | chr1:20829047-20828617 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 270 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 282, 134 |
| Conread position: | 13-450 |
| Cow position: | chr1:61309161-61308731 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 271 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 11, 140 |
| Conread position: | 14-434 |
| Cow position: | chr1:62925769-62925357 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 262 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 281, 12 |
| Conread position: | 15-346 |
| Cow position: | chr1:28711072-28710739 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 280, 132 |
| Conread position: | 23-440 |
| Cow position: | chr1:82564651-82564243 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 260 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 271, 124 |
| Conread position: | 25-440 |
| Cow position: | chr1:79920581-79920989 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 259 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 270, 127 |
| Conread position: | 25-450 |
| Cow position: | chr1:55276340-55276758 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 267 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 270, 127 |
| Conread position: | 25-450 |
| Cow position: | chr1:71562428-71562847 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 269 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 31, 24 |
| Conread position: | 26-376 |
| Cow position: | chr1:82903094-82902752 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 242 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 191, 57 |
| Conread position: | 26-440 |
| Cow position: | chr1:39543913-39543509 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 256 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 269, 48 |
| Conread position: | 26-450 |
| Cow position: | chr1:8554473-8554049 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 261 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 283, 132 |
| Conread position: | 27-346 |
| Cow position: | chr1:18880249-18880562 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 84, 71 |
| Conread position: | 27-346 |
| Cow position: | chr1:40053499-40053178 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 268, 125 |
| Conread position: | 30-473 |
| Cow position: | chr1:11900509-11900947 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 280 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 65, 19 |
| Conread position: | 32-476 |
| Cow position: | chr1:30766549-30766975 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 295 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 85, 71 |
| Conread position: | 42-379 |
| Cow position: | chr1:99313026-99313359 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 253, 22 |
| Conread position: | 50-339 |
| Cow position: | chr1:15347464-15347752 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 245, 102 |
| Conread position: | 67-339 |
| Cow position: | chr1:101857880-101858147 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 88, 96 |
| Conread position: | 67-369 |
| Cow position: | chr1:74280082-74280383 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 201 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 200, 51 |
| Conread position: | 76-471 |
| Cow position: | chr1:37654301-37654674 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 263 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 332, 46 |
| Conread position: | 103-470 |
| Cow position: | chr1:39880790-39880447 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 244 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 19, 13 |
| Conread position: | 106-450 |
| Cow position: | chr1:17036493-17036830 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 189, 52 |
| Conread position: | 140-475 |
| Cow position: | chr1:58999070-58998743 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 218 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 34, 118 |
| Conread position: | 178-376 |
| Cow position: | chr1:30858788-30858983 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 147, 47 |
| Conread position: | 209-477 |
| Cow position: | chr1:64833938-64834193 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 117, 100 |
Show alignments to all cow chromosomes.