Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01D030025.5 |
| Conread position: | 13-340 |
| Cow position: | chrX:18659869-18660195 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 204 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 11, 152 |
| Conread position: | 13-346 |
| Cow position: | chrX:11465089-11465421 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 11, 91 |
| Conread position: | 13-346 |
| Cow position: | chrX:35529773-35529438 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 11, 136 |
| Conread position: | 13-373 |
| Cow position: | chrX:7093511-7093152 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 11, 86 |
| Conread position: | 13-440 |
| Cow position: | chrX:22525691-22526109 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 263 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 11, 135 |
| Conread position: | 13-450 |
| Cow position: | chrX:12289029-12289459 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 267 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 282, 134 |
| Conread position: | 13-450 |
| Cow position: | chrX:18219310-18218879 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 266 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 11, 140 |
| Conread position: | 14-346 |
| Cow position: | chrX:12803951-12804282 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 213 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 12, 156 |
| Conread position: | 15-307 |
| Cow position: | chrX:24521512-24521223 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 117, 20 |
| Conread position: | 16-405 |
| Cow position: | chrX:24122011-24122389 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 246, 47 |
| Conread position: | 25-300 |
| Cow position: | chrX:41411121-41411394 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 270, 122 |
| Conread position: | 25-339 |
| Cow position: | chrX:39521807-39521494 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 196 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 284, 127 |
| Conread position: | 25-345 |
| Cow position: | chrX:8670492-8670174 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 270, 127 |
| Conread position: | 25-346 |
| Cow position: | chrX:7481503-7481184 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 270, 122 |
| Conread position: | 25-434 |
| Cow position: | chrX:9192744-9193146 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 255 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 270, 122 |
| Conread position: | 25-436 |
| Cow position: | chrX:22778212-22777813 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 258 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 31, 24 |
| Conread position: | 25-440 |
| Cow position: | chrX:27426416-27426824 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 256 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 270, 122 |
| Conread position: | 25-440 |
| Cow position: | chrX:30666039-30666446 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 256 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 270, 107 |
| Conread position: | 25-440 |
| Cow position: | chrX:37848914-37848505 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 254 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 270, 122 |
| Conread position: | 25-443 |
| Cow position: | chrX:8479601-8479195 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 262 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 270, 122 |
| Conread position: | 25-450 |
| Cow position: | chrX:2603949-2603523 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 262 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 270, 122 |
| Conread position: | 25-450 |
| Cow position: | chrX:2859901-2860324 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 265 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 86, 68 |
| Conread position: | 25-450 |
| Cow position: | chrX:7030089-7029665 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 263 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 270, 122 |
| Conread position: | 25-450 |
| Cow position: | chrX:17478623-17479047 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 267 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 6, 123 |
| Conread position: | 25-476 |
| Cow position: | chrX:13076797-13077235 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 280 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 270, 122 |
| Conread position: | 25-476 |
| Cow position: | chrX:13097371-13097809 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 278 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 270, 122 |
| Conread position: | 26-372 |
| Cow position: | chrX:37180963-37181310 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 80, 59 |
| Conread position: | 26-450 |
| Cow position: | chrX:10531659-10532083 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 258 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 269, 126 |
| Conread position: | 26-476 |
| Cow position: | chrX:17631925-17632372 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 289 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 30, 23 |
| Conread position: | 46-303 |
| Cow position: | chrX:20700620-20700875 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 83, 111 |
| Conread position: | 47-374 |
| Cow position: | chrX:29064552-29064234 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 34, 9 |
| Conread position: | 49-372 |
| Cow position: | chrX:235098-234786 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 234, 54 |
| Conread position: | 49-372 |
| Cow position: | chrX:20426810-20426497 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 71, 13 |
| Conread position: | 55-372 |
| Cow position: | chrX:23947298-23946960 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 226 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 56, 194 |
| Conread position: | 58-381 |
| Cow position: | chrX:21733524-21733855 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 6, 120 |
| Conread position: | 62-281 |
| Cow position: | chrX:24768075-24768292 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 148 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 62-473 |
| Cow position: | chrX:11026158-11025759 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 274 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 207, 71 |
| Conread position: | 62-473 |
| Cow position: | chrX:14816226-14815818 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 262 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 172, 260 |
| Conread position: | 67-311 |
| Cow position: | chrX:18939355-18939598 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 198, 10 |
| Conread position: | 69-375 |
| Cow position: | chrX:4080620-4080945 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 53, 31 |
| Conread position: | 92-371 |
| Cow position: | chrX:25340267-25339994 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 197 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 213, 61 |
| Conread position: | 105-440 |
| Cow position: | chrX:9008160-9007836 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 216 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 47, 17 |
| Conread position: | 109-376 |
| Cow position: | chrX:19605546-19605804 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 181 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 202, 44 |
| Conread position: | 109-450 |
| Cow position: | chrX:7751715-7751382 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 186, 43 |
| Conread position: | 123-301 |
| Cow position: | chrX:23419988-23420159 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 157, 40 |
| Conread position: | 147-353 |
| Cow position: | chrX:11727795-11727585 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 163-459 |
| Cow position: | chrX:18415831-18415539 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 149, 119 |
| Conread position: | 163-473 |
| Cow position: | chrX:21771355-21771661 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 140, 73 |
| Conread position: | 419-588 |
| Cow position: | chrX:17524098-17524262 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 437-590 |
| Cow position: | chrX:31489793-31489640 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 30, 144 |
| Conread position: | 448-578 |
| Cow position: | chrX:44040435-44040307 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 461-590 |
| Cow position: | chrX:6544492-6544362 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 465-586 |
| Cow position: | chrX:11670930-11670810 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 95 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 115, 0 |
Show alignments to all cow chromosomes.