Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01G030010.5 |
| Conread position: | 1-228 |
| Cow position: | chr10:47743637-47743414 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 89, 8 |
| Conread position: | 1-245 |
| Cow position: | chr10:46080870-46080629 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 89, 16 |
| Conread position: | 1-245 |
| Cow position: | chr10:58840391-58840634 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 87, 34 |
| Conread position: | 1-268 |
| Cow position: | chr10:8094911-8095176 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 202, 34 |
| Conread position: | 1-274 |
| Cow position: | chr10:52670641-52670910 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 12, 101 |
| Conread position: | 1-276 |
| Cow position: | chr10:30615768-30615491 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 13, 110 |
| Conread position: | 1-276 |
| Cow position: | chr10:34730478-34730208 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 17, 88 |
| Conread position: | 1-286 |
| Cow position: | chr10:55143336-55143056 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 13, 105 |
| Conread position: | 1-312 |
| Cow position: | chr10:45039739-45040046 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 12, 50 |
| Conread position: | 1-312 |
| Cow position: | chr10:57076920-57077228 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 116 |
| Conread position: | 1-368 |
| Cow position: | chr10:21373239-21372870 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 252 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 80, 16 |
| Conread position: | 1-378 |
| Cow position: | chr10:15381295-15381685 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 271 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 249, 16 |
| Conread position: | 1-402 |
| Cow position: | chr10:51683667-51683265 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 117 |
| Conread position: | 1-407 |
| Cow position: | chr10:25502954-25503351 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 111 |
| Conread position: | 1-415 |
| Cow position: | chr10:19651738-19651322 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 284 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 257, 52 |
| Conread position: | 2-135 |
| Cow position: | chr10:16314659-16314527 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 102 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 2-228 |
| Cow position: | chr10:49647072-49647294 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 58, 105 |
| Conread position: | 3-376 |
| Cow position: | chr10:65350070-65349710 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 245 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 64, 9 |
| Conread position: | 5-354 |
| Cow position: | chr10:47231535-47231168 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 255 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 8, 47 |
| Conread position: | 9-275 |
| Cow position: | chr10:55117977-55117712 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 28, 106 |
| Conread position: | 10-228 |
| Cow position: | chr10:14424507-14424290 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 7, 38 |
| Conread position: | 10-270 |
| Cow position: | chr10:39612319-39612058 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 172 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 157, 39 |
| Conread position: | 12-407 |
| Cow position: | chr10:3878097-3878467 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 271 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 232, 66 |
| Conread position: | 13-283 |
| Cow position: | chr10:55059487-55059225 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 91, 70 |
| Conread position: | 13-313 |
| Cow position: | chr10:16741522-16741230 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 219 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 134, 90 |
| Conread position: | 17-284 |
| Cow position: | chr10:726362-726624 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 71, 87 |
| Conread position: | 17-376 |
| Cow position: | chr10:54966742-54967098 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 62, 71 |
| Conread position: | 148-276 |
| Cow position: | chr10:55103303-55103174 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 26, 127 |
| Conread position: | 437-723 |
| Cow position: | chr10:42678445-42678175 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 81, 27 |
| Conread position: | 442-636 |
| Cow position: | chr10:50702932-50703132 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 100, 159 |
| Conread position: | 442-675 |
| Cow position: | chr10:52421178-52421411 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 145, 100 |
| Conread position: | 442-724 |
| Cow position: | chr10:55305775-55306052 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 46, 113 |
| Conread position: | 442-726 |
| Cow position: | chr10:33445528-33445821 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 197 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 456-753 |
| Cow position: | chr10:50565289-50565000 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 223 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 61, 188 |
| Conread position: | 538-683 |
| Cow position: | chr10:9116843-9116699 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 859-1021 |
| Cow position: | chr10:36760370-36760535 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 867-1023 |
| Cow position: | chr10:55307866-55308019 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 86, 44 |
Show alignments to all cow chromosomes.