Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01G030010.5 |
| Conread position: | 1-164 |
| Cow position: | chr11:35576667-35576831 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 119 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 81, 11 |
| Conread position: | 1-216 |
| Cow position: | chr11:20992466-20992254 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 42, 11 |
| Conread position: | 1-226 |
| Cow position: | chr11:66869934-66869710 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 172, 11 |
| Conread position: | 1-265 |
| Cow position: | chr11:11684704-11684967 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 125, 11 |
| Conread position: | 1-268 |
| Cow position: | chr11:39277137-39276866 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 194 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 87, 11 |
| Conread position: | 1-286 |
| Cow position: | chr11:2894706-2894984 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 9, 104 |
| Conread position: | 1-286 |
| Cow position: | chr11:33442658-33442380 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 202 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 13, 54 |
| Conread position: | 1-314 |
| Cow position: | chr11:30216517-30216212 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 209 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 94, 11 |
| Conread position: | 1-350 |
| Cow position: | chr11:14353599-14353242 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 243 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 124, 11 |
| Conread position: | 1-377 |
| Cow position: | chr11:12167797-12167407 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 273 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 256, 11 |
| Conread position: | 1-383 |
| Cow position: | chr11:42119662-42119275 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 272 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 87, 7 |
| Conread position: | 1-393 |
| Cow position: | chr11:63989075-63988681 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 252 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 102, 11 |
| Conread position: | 1-401 |
| Cow position: | chr11:40366366-40366794 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 284 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 82, 213 |
| Conread position: | 1-409 |
| Cow position: | chr11:8369140-8368723 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 291 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 12, 208 |
| Conread position: | 2-385 |
| Cow position: | chr11:81347623-81348009 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 271 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 119, 33 |
| Conread position: | 4-281 |
| Cow position: | chr11:66033652-66033922 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 150, 8 |
| Conread position: | 12-275 |
| Cow position: | chr11:12336181-12336442 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 195 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 135, 98 |
| Conread position: | 13-319 |
| Cow position: | chr11:52364574-52364265 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 222 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 84, 16 |
| Conread position: | 17-237 |
| Cow position: | chr11:70142935-70142718 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 18-377 |
| Cow position: | chr11:26305531-26305161 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 250 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 70, 87 |
| Conread position: | 39-354 |
| Cow position: | chr11:66886079-66885753 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 53, 200 |
| Conread position: | 51-362 |
| Cow position: | chr11:76870493-76870796 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 156, 21 |
| Conread position: | 51-382 |
| Cow position: | chr11:79710078-79709754 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 226 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 134, 54 |
| Conread position: | 65-374 |
| Cow position: | chr11:8754979-8754668 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 52, 32 |
| Conread position: | 134-313 |
| Cow position: | chr11:48888820-48889000 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 53, 143 |
| Conread position: | 420-755 |
| Cow position: | chr11:7044926-7045267 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 227 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 114, 45 |
| Conread position: | 442-659 |
| Cow position: | chr11:7051245-7051463 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 5, 139 |
| Conread position: | 442-659 |
| Cow position: | chr11:8516157-8516383 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 5, 140 |
| Conread position: | 442-715 |
| Cow position: | chr11:8531494-8531212 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 206 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 50, 40 |
| Conread position: | 442-746 |
| Cow position: | chr11:7067170-7067484 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 227 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 46, 23 |
| Conread position: | 442-927 |
| Cow position: | chr11:72092736-72092246 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 324 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 90, 309 |
| Conread position: | 456-726 |
| Cow position: | chr11:9740527-9740791 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 194 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 32, 88 |
| Conread position: | 474-720 |
| Cow position: | chr11:9716153-9716400 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 13, 102 |
| Conread position: | 835-1023 |
| Cow position: | chr11:9741475-9741660 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 163, 76 |
| Conread position: | 858-1023 |
| Cow position: | chr11:7051618-7051786 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 863-1006 |
| Cow position: | chr11:81832821-81832682 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 75, 105 |
| Conread position: | 863-1023 |
| Cow position: | chr11:9727034-9727196 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 69, 124 |
| Conread position: | 872-1023 |
| Cow position: | chr11:8516546-8516700 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 70, 0 |
Show alignments to all cow chromosomes.