Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01G030010.5 |
| Conread position: | 1-208 |
| Cow position: | chr2:44687588-44687794 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 142 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 124, 11 |
| Conread position: | 1-208 |
| Cow position: | chr2:86430720-86430524 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 146 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 1-234 |
| Cow position: | chr2:45933957-45934190 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 136, 86 |
| Conread position: | 1-245 |
| Cow position: | chr2:47149774-47150012 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 87, 7 |
| Conread position: | 1-252 |
| Cow position: | chr2:12767942-12768189 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 158, 11 |
| Conread position: | 1-259 |
| Cow position: | chr2:1479564-1479818 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 125, 11 |
| Conread position: | 1-260 |
| Cow position: | chr2:36855462-36855207 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 89, 8 |
| Conread position: | 1-276 |
| Cow position: | chr2:39549012-39548751 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 13, 110 |
| Conread position: | 1-276 |
| Cow position: | chr2:48071246-48070972 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 10, 25 |
| Conread position: | 1-276 |
| Cow position: | chr2:74811456-74811178 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 13, 75 |
| Conread position: | 1-279 |
| Cow position: | chr2:20909085-20909354 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 195 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 80, 11 |
| Conread position: | 1-280 |
| Cow position: | chr2:2400350-2400626 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 196 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 93, 116 |
| Conread position: | 1-281 |
| Cow position: | chr2:24509048-24508775 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 196 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 79, 11 |
| Conread position: | 1-286 |
| Cow position: | chr2:33512580-33512291 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 200 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 11, 78 |
| Conread position: | 1-300 |
| Cow position: | chr2:17347543-17347244 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 218 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 111, 48 |
| Conread position: | 3-133 |
| Cow position: | chr2:1093179-1093051 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 10, 41 |
| Conread position: | 3-215 |
| Cow position: | chr2:72411479-72411690 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 11, 39 |
| Conread position: | 4-312 |
| Cow position: | chr2:44972813-44972511 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 205 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 76, 5 |
| Conread position: | 5-444 |
| Cow position: | chr2:40020971-40021413 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 303 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 262, 64 |
| Conread position: | 7-301 |
| Cow position: | chr2:81756458-81756164 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 57, 43 |
| Conread position: | 10-276 |
| Cow position: | chr2:19150441-19150187 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 159, 98 |
| Conread position: | 12-135 |
| Cow position: | chr2:52865337-52865205 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 12-276 |
| Cow position: | chr2:73750779-73751032 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 112, 34 |
| Conread position: | 12-312 |
| Cow position: | chr2:37096895-37096598 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 38 |
| Conread position: | 12-411 |
| Cow position: | chr2:64154576-64154967 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 65 |
| Conread position: | 12-412 |
| Cow position: | chr2:68702421-68702812 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 81 |
| Conread position: | 16-238 |
| Cow position: | chr2:50965278-50965057 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 67, 19 |
| Conread position: | 17-208 |
| Cow position: | chr2:36417422-36417232 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 103, 78 |
| Conread position: | 17-238 |
| Cow position: | chr2:34293134-34292913 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 86, 77 |
| Conread position: | 17-245 |
| Cow position: | chr2:23043307-23043531 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 164 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 73, 87 |
| Conread position: | 17-309 |
| Cow position: | chr2:39255422-39255129 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 119, 85 |
| Conread position: | 18-244 |
| Cow position: | chr2:28918628-28918851 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 151 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 141, 106 |
| Conread position: | 18-246 |
| Cow position: | chr2:49909046-49909267 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 19-290 |
| Cow position: | chr2:13332058-13332320 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 11, 85 |
| Conread position: | 39-309 |
| Cow position: | chr2:64659825-64660102 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 34, 178 |
| Conread position: | 51-264 |
| Cow position: | chr2:21724796-21725013 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 160 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 61, 28 |
| Conread position: | 92-313 |
| Cow position: | chr2:37107205-37106984 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 171 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 93, 19 |
| Conread position: | 95-309 |
| Cow position: | chr2:12301631-12301847 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 20, 62 |
| Conread position: | 113-269 |
| Cow position: | chr2:27379658-27379815 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 67, 14 |
| Conread position: | 113-323 |
| Cow position: | chr2:46923575-46923366 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 16, 93 |
| Conread position: | 116-268 |
| Cow position: | chr2:19709829-19709675 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 442-635 |
| Cow position: | chr2:35971826-35972024 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 105, 137 |
| Conread position: | 442-636 |
| Cow position: | chr2:7293055-7292859 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 96, 139 |
| Conread position: | 442-636 |
| Cow position: | chr2:46772439-46772243 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 93, 141 |
| Conread position: | 442-726 |
| Cow position: | chr2:82294594-82294869 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 147, 40 |
| Conread position: | 443-677 |
| Cow position: | chr2:68349633-68349400 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 51, 112 |
| Conread position: | 456-726 |
| Cow position: | chr2:58461598-58461879 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 456-726 |
| Cow position: | chr2:83886574-83886311 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 128, 98 |
| Conread position: | 859-1004 |
| Cow position: | chr2:45929536-45929683 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 81, 129 |
| Conread position: | 859-1023 |
| Cow position: | chr2:46772057-46771891 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 83, 25 |
| Conread position: | 864-1023 |
| Cow position: | chr2:7292708-7292547 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 78, 20 |
| Conread position: | 867-1013 |
| Cow position: | chr2:85995453-85995309 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 75, 44 |
| Conread position: | 867-1023 |
| Cow position: | chr2:82295495-82295648 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 86, 40 |
| Conread position: | 869-1023 |
| Cow position: | chr2:35972218-35972383 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 43, 0 |
Show alignments to all cow chromosomes.