Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01G030010.5 |
| Conread position: | 1-161 |
| Cow position: | chr3:53578276-53578437 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 87, 11 |
| Conread position: | 1-208 |
| Cow position: | chr3:75097534-75097741 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 77, 11 |
| Conread position: | 1-209 |
| Cow position: | chr3:16788808-16789019 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 166 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 12, 52 |
| Conread position: | 1-238 |
| Cow position: | chr3:23846909-23846672 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 105, 11 |
| Conread position: | 1-238 |
| Cow position: | chr3:24773376-24773144 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 81, 11 |
| Conread position: | 1-252 |
| Cow position: | chr3:48037264-48037514 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 125, 102 |
| Conread position: | 1-268 |
| Cow position: | chr3:22696601-22696866 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 184 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 162, 11 |
| Conread position: | 1-274 |
| Cow position: | chr3:63998039-63998311 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 16, 131 |
| Conread position: | 1-280 |
| Cow position: | chr3:36780552-36780824 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 195 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 80, 11 |
| Conread position: | 1-281 |
| Cow position: | chr3:36783276-36783553 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 80, 11 |
| Conread position: | 1-281 |
| Cow position: | chr3:48090957-48091229 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 124, 8 |
| Conread position: | 1-282 |
| Cow position: | chr3:78548680-78548953 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 125, 11 |
| Conread position: | 1-283 |
| Cow position: | chr3:3794796-3795083 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 15, 50 |
| Conread position: | 1-310 |
| Cow position: | chr3:5455339-5455652 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 50 |
| Conread position: | 1-319 |
| Cow position: | chr3:49006405-49006084 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 17, 8 |
| Conread position: | 1-323 |
| Cow position: | chr3:24665803-24665486 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 231 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 172, 49 |
| Conread position: | 1-396 |
| Cow position: | chr3:5619485-5619100 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 268, 83 |
| Conread position: | 1-401 |
| Cow position: | chr3:6190432-6190018 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 285 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 93, 8 |
| Conread position: | 2-164 |
| Cow position: | chr3:19696695-19696538 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 121 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 88, 7 |
| Conread position: | 3-153 |
| Cow position: | chr3:22702489-22702637 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 112 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 78, 91 |
| Conread position: | 3-246 |
| Cow position: | chr3:28485647-28485408 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 122, 14 |
| Conread position: | 5-389 |
| Cow position: | chr3:58307085-58306688 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 254 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 83, 117 |
| Conread position: | 9-276 |
| Cow position: | chr3:63151947-63151676 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 71, 15 |
| Conread position: | 12-307 |
| Cow position: | chr3:52852232-52851945 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 26, 90 |
| Conread position: | 12-307 |
| Cow position: | chr3:61961990-61961689 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 87, 277 |
| Conread position: | 12-359 |
| Cow position: | chr3:48573466-48573113 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 239 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 78, 34 |
| Conread position: | 13-409 |
| Cow position: | chr3:33784004-33784385 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 62 |
| Conread position: | 35-409 |
| Cow position: | chr3:7814193-7814562 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 244 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 70, 103 |
| Conread position: | 65-321 |
| Cow position: | chr3:25730612-25730357 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 45 |
| Conread position: | 130-320 |
| Cow position: | chr3:25695348-25695157 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 50, 156 |
| Conread position: | 148-396 |
| Cow position: | chr3:549144-548907 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 38, 31 |
| Conread position: | 186-382 |
| Cow position: | chr3:541546-541357 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 442-636 |
| Cow position: | chr3:45838596-45838394 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 75, 140 |
| Conread position: | 442-666 |
| Cow position: | chr3:25694997-25694770 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 124, 67 |
| Conread position: | 442-726 |
| Cow position: | chr3:32168038-32167758 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 46, 113 |
| Conread position: | 442-733 |
| Cow position: | chr3:25819946-25819647 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 197 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 132, 114 |
| Conread position: | 443-675 |
| Cow position: | chr3:39175101-39174875 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 146, 11 |
| Conread position: | 867-1024 |
| Cow position: | chr3:39174227-39174071 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 80, 44 |
Show alignments to all cow chromosomes.