Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01G030010.5 |
| Conread position: | 1-135 |
| Cow position: | chr5:47233539-47233673 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 13, 32 |
| Conread position: | 1-164 |
| Cow position: | chr5:39800946-39800784 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 89, 8 |
| Conread position: | 1-164 |
| Cow position: | chr5:45198938-45198776 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 149, 11 |
| Conread position: | 1-164 |
| Cow position: | chr5:66106493-66106652 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 1-173 |
| Cow position: | chr5:25896556-25896389 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 86, 11 |
| Conread position: | 1-245 |
| Cow position: | chr5:29075821-29076074 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 81, 8 |
| Conread position: | 1-265 |
| Cow position: | chr5:7394075-7393811 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 195 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 12, 105 |
| Conread position: | 1-267 |
| Cow position: | chr5:17732099-17732354 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 13, 112 |
| Conread position: | 1-281 |
| Cow position: | chr5:37371929-37372214 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 28, 108 |
| Conread position: | 1-351 |
| Cow position: | chr5:47357678-47358030 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 124, 11 |
| Conread position: | 1-370 |
| Cow position: | chr5:21042779-21043158 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 258 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 76, 11 |
| Conread position: | 1-373 |
| Cow position: | chr5:7283924-7283544 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 17 |
| Conread position: | 2-376 |
| Cow position: | chr5:58439163-58439534 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 255 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 78, 10 |
| Conread position: | 11-276 |
| Cow position: | chr5:20840290-20840551 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 174, 103 |
| Conread position: | 12-274 |
| Cow position: | chr5:8760812-8761067 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 171, 25 |
| Conread position: | 12-381 |
| Cow position: | chr5:31512246-31511874 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 11, 46 |
| Conread position: | 12-407 |
| Cow position: | chr5:71528006-71528395 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 263 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 288, 114 |
| Conread position: | 12-410 |
| Cow position: | chr5:66584303-66584704 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 100 |
| Conread position: | 13-261 |
| Cow position: | chr5:2188842-2188606 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 171 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 156, 44 |
| Conread position: | 13-301 |
| Cow position: | chr5:8230535-8230823 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 211 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 129, 122 |
| Conread position: | 15-276 |
| Cow position: | chr5:45565294-45565033 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 187 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 118, 7 |
| Conread position: | 15-378 |
| Cow position: | chr5:68441503-68441863 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 236 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 253, 19 |
| Conread position: | 16-444 |
| Cow position: | chr5:53637956-53638388 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 292 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 64, 19 |
| Conread position: | 91-309 |
| Cow position: | chr5:13458844-13458626 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 12, 79 |
| Conread position: | 127-313 |
| Cow position: | chr5:47394593-47394776 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 55, 34 |
| Conread position: | 148-308 |
| Cow position: | chr5:60277845-60278002 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 38, 131 |
| Conread position: | 182-407 |
| Cow position: | chr5:32995630-32995395 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 38, 214 |
| Conread position: | 436-755 |
| Cow position: | chr5:25445165-25445493 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 55, 28 |
| Conread position: | 442-636 |
| Cow position: | chr5:21505059-21505255 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 46, 54 |
| Conread position: | 442-638 |
| Cow position: | chr5:8764650-8764850 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 96, 141 |
| Conread position: | 442-659 |
| Cow position: | chr5:47996137-47995912 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 39, 142 |
| Conread position: | 442-662 |
| Cow position: | chr5:67098855-67099070 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 147, 112 |
| Conread position: | 442-668 |
| Cow position: | chr5:53638409-53638631 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 200, 99 |
| Conread position: | 458-641 |
| Cow position: | chr5:15192144-15191951 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 63, 190 |
| Conread position: | 459-636 |
| Cow position: | chr5:18657911-18658088 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 21, 31 |
| Conread position: | 460-636 |
| Cow position: | chr5:24888965-24889148 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 131 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 859-1023 |
| Cow position: | chr5:67099797-67099960 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 80, 51 |
| Conread position: | 863-1022 |
| Cow position: | chr5:24889339-24889501 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 863-1022 |
| Cow position: | chr5:64041436-64041598 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 871-997 |
| Cow position: | chr5:69134003-69134130 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 98 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 71, 0 |
Show alignments to all cow chromosomes.