Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01G030010.5 |
| Conread position: | 1-164 |
| Cow position: | chr7:161779-161617 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 82, 88 |
| Conread position: | 1-215 |
| Cow position: | chr7:49093073-49093271 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 13, 84 |
| Conread position: | 1-243 |
| Cow position: | chr7:30544954-30544718 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 1-244 |
| Cow position: | chr7:4948213-4948448 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 184, 40 |
| Conread position: | 1-246 |
| Cow position: | chr7:38811264-38811020 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 74, 103 |
| Conread position: | 1-281 |
| Cow position: | chr7:25828550-25828825 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 107, 11 |
| Conread position: | 1-281 |
| Cow position: | chr7:50754958-50754688 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 87, 11 |
| Conread position: | 1-281 |
| Cow position: | chr7:57380594-57380319 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 102, 8 |
| Conread position: | 1-307 |
| Cow position: | chr7:63129613-63129309 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 204 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 13, 52 |
| Conread position: | 1-320 |
| Cow position: | chr7:31005714-31006015 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 216 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 78, 30 |
| Conread position: | 1-351 |
| Cow position: | chr7:55975288-55974937 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 158, 11 |
| Conread position: | 1-376 |
| Cow position: | chr7:40900296-40899913 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 251 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 93, 11 |
| Conread position: | 1-382 |
| Cow position: | chr7:8333005-8332628 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 11 |
| Conread position: | 1-405 |
| Cow position: | chr7:31108470-31108066 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 267 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 87, 62 |
| Conread position: | 1-406 |
| Cow position: | chr7:23290590-23290996 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 283 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 12, 48 |
| Conread position: | 1-412 |
| Cow position: | chr7:33509627-33509231 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 275 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 87, 16 |
| Conread position: | 5-258 |
| Cow position: | chr7:13835382-13835135 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 180, 7 |
| Conread position: | 8-365 |
| Cow position: | chr7:35445080-35445420 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 29, 103 |
| Conread position: | 9-307 |
| Cow position: | chr7:41113691-41113974 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 177, 92 |
| Conread position: | 10-274 |
| Cow position: | chr7:26776495-26776235 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 25, 101 |
| Conread position: | 12-253 |
| Cow position: | chr7:302917-302686 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 186 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 174, 54 |
| Conread position: | 12-391 |
| Cow position: | chr7:43277531-43277168 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 256 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 84, 113 |
| Conread position: | 12-407 |
| Cow position: | chr7:41282228-41281829 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 39 |
| Conread position: | 15-444 |
| Cow position: | chr7:50589511-50589964 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 298 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 75, 48 |
| Conread position: | 17-229 |
| Cow position: | chr7:44186411-44186628 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 63, 87 |
| Conread position: | 34-324 |
| Cow position: | chr7:11880860-11881145 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 16 |
| Conread position: | 63-310 |
| Cow position: | chr7:2981870-2981625 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 122, 108 |
| Conread position: | 74-934 |
| Cow position: | chr7:20872032-20871156 (view UCSC Genome Browser custom track) |
| Alignm length: | 907 |
| Alignm identity: | 567 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 133, 5 |
| Conread position: | 91-312 |
| Cow position: | chr7:55778163-55778384 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 21, 176 |
| Conread position: | 103-313 |
| Cow position: | chr7:25124078-25123868 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 83, 164 |
| Conread position: | 436-726 |
| Cow position: | chr7:27467192-27467488 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 103, 20 |
| Conread position: | 442-657 |
| Cow position: | chr7:50589985-50590209 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 442-659 |
| Cow position: | chr7:18107586-18107362 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 96, 141 |
| Conread position: | 442-690 |
| Cow position: | chr7:30544479-30544219 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 442-726 |
| Cow position: | chr7:42324967-42324684 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 214 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 74, 205 |
| Conread position: | 446-636 |
| Cow position: | chr7:27115887-27115694 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 96, 136 |
| Conread position: | 448-675 |
| Cow position: | chr7:28440808-28441039 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 95, 135 |
| Conread position: | 449-679 |
| Cow position: | chr7:13800764-13800528 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 93, 224 |
| Conread position: | 456-676 |
| Cow position: | chr7:16140333-16140558 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 24, 34 |
| Conread position: | 538-706 |
| Cow position: | chr7:64729565-64729735 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 541-726 |
| Cow position: | chr7:12453542-12453729 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 859-1008 |
| Cow position: | chr7:18310832-18310680 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 859-1023 |
| Cow position: | chr7:3661516-3661350 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 83, 25 |
| Conread position: | 859-1023 |
| Cow position: | chr7:18107192-18107023 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 64, 25 |
| Conread position: | 864-1023 |
| Cow position: | chr7:41116823-41116980 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 129 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 78, 42 |
Show alignments to all cow chromosomes.