Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01G030010.5 |
| Conread position: | 1-164 |
| Cow position: | chr9:12637955-12638120 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 127 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 81, 16 |
| Conread position: | 1-229 |
| Cow position: | chr9:15993021-15993248 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 80, 11 |
| Conread position: | 1-246 |
| Cow position: | chr9:7615670-7615909 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 182 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 58, 7 |
| Conread position: | 1-250 |
| Cow position: | chr9:7008649-7008899 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 87, 8 |
| Conread position: | 1-256 |
| Cow position: | chr9:5701784-5701528 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 125, 11 |
| Conread position: | 1-256 |
| Cow position: | chr9:42252408-42252663 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 81, 11 |
| Conread position: | 1-276 |
| Cow position: | chr9:25032440-25032701 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 10, 53 |
| Conread position: | 1-276 |
| Cow position: | chr9:28281934-28281662 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 15, 110 |
| Conread position: | 1-376 |
| Cow position: | chr9:30200344-30199966 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 253 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 80, 88 |
| Conread position: | 1-376 |
| Cow position: | chr9:36602779-36602415 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 243 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 87, 11 |
| Conread position: | 2-238 |
| Cow position: | chr9:34047545-34047779 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 76, 87 |
| Conread position: | 2-281 |
| Cow position: | chr9:8627594-8627323 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 79, 10 |
| Conread position: | 5-274 |
| Cow position: | chr9:62925620-62925358 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 9, 109 |
| Conread position: | 9-222 |
| Cow position: | chr9:9729647-9729858 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 52, 96 |
| Conread position: | 9-300 |
| Cow position: | chr9:44917702-44917415 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 215 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 52, 41 |
| Conread position: | 9-407 |
| Cow position: | chr9:25542950-25543331 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 42 |
| Conread position: | 10-276 |
| Cow position: | chr9:20984235-20983975 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 20, 111 |
| Conread position: | 12-267 |
| Cow position: | chr9:22953319-22953575 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 127, 45 |
| Conread position: | 14-382 |
| Cow position: | chr9:25436956-25437325 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 37 |
| Conread position: | 17-286 |
| Cow position: | chr9:3873400-3873658 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 169, 54 |
| Conread position: | 17-351 |
| Cow position: | chr9:4968651-4968310 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 228 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 109, 86 |
| Conread position: | 77-393 |
| Cow position: | chr9:6317866-6317549 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 84, 34 |
| Conread position: | 113-313 |
| Cow position: | chr9:49298165-49298358 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 72, 12 |
| Conread position: | 436-730 |
| Cow position: | chr9:17990147-17990430 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 50, 28 |
| Conread position: | 442-659 |
| Cow position: | chr9:28535996-28535772 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 96, 136 |
| Conread position: | 443-706 |
| Cow position: | chr9:22680426-22680691 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 89, 149 |
| Conread position: | 522-713 |
| Cow position: | chr9:743522-743717 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 26, 76 |
Show alignments to all cow chromosomes.