Cow genome map
| Conread name: | Ss1.1-LyN1-MLN01G030010.5 |
| Conread position: | 1-217 |
| Cow position: | chrX:28698536-28698322 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 78, 8 |
| Conread position: | 1-252 |
| Cow position: | chrX:32979080-32978828 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 174 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 87, 11 |
| Conread position: | 1-264 |
| Cow position: | chrX:112553-112297 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 12, 110 |
| Conread position: | 1-268 |
| Cow position: | chrX:30675108-30675376 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 187 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 109, 135 |
| Conread position: | 1-268 |
| Cow position: | chrX:42496704-42496970 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 158, 102 |
| Conread position: | 1-269 |
| Cow position: | chrX:21177641-21177892 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 15, 30 |
| Conread position: | 1-276 |
| Cow position: | chrX:25435175-25434903 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 199 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 13, 110 |
| Conread position: | 1-281 |
| Cow position: | chrX:28042572-28042300 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 191 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 87, 8 |
| Conread position: | 1-284 |
| Cow position: | chrX:5414331-5414608 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 124, 10 |
| Conread position: | 1-301 |
| Cow position: | chrX:219969-219681 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 37 |
| Conread position: | 1-376 |
| Cow position: | chrX:25306905-25306520 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 267 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 253, 7 |
| Conread position: | 5-250 |
| Cow position: | chrX:15267473-15267233 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 84, 46 |
| Conread position: | 9-313 |
| Cow position: | chrX:21424513-21424219 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 205 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 52, 7 |
| Conread position: | 12-228 |
| Cow position: | chrX:19503227-19503441 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 15-366 |
| Cow position: | chrX:26352142-26352490 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 235 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 134, 95 |
| Conread position: | 16-313 |
| Cow position: | chrX:21464167-21464455 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 196 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 48, 81 |
| Conread position: | 33-265 |
| Cow position: | chrX:1151408-1151630 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 143, 66 |
| Conread position: | 61-347 |
| Cow position: | chrX:26272122-26272420 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 21, 53 |
| Conread position: | 185-309 |
| Cow position: | chrX:15370071-15370192 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 99 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 304-726 |
| Cow position: | chrX:17791087-17790645 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 81 |
| Conread position: | 428-675 |
| Cow position: | chrX:31859603-31859855 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 8, 15 |
| Conread position: | 442-659 |
| Cow position: | chrX:830830-830606 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 96, 136 |
| Conread position: | 442-675 |
| Cow position: | chrX:42570366-42570127 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 97, 38 |
| Conread position: | 442-726 |
| Cow position: | chrX:31204224-31204505 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 5, 113 |
| Conread position: | 446-636 |
| Cow position: | chrX:26803276-26803470 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 100, 134 |
| Conread position: | 451-675 |
| Cow position: | chrX:40598901-40599128 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 91, 131 |
| Conread position: | 453-723 |
| Cow position: | chrX:42559887-42560158 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 11 |
| Conread position: | 456-675 |
| Cow position: | chrX:9514815-9514593 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 86, 126 |
| Conread position: | 456-724 |
| Cow position: | chrX:42417242-42417502 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 188 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 133, 26 |
| Conread position: | 859-1023 |
| Cow position: | chrX:830446-830279 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 863-1023 |
| Cow position: | chrX:31205150-31205313 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 864-1021 |
| Cow position: | chrX:42418111-42418266 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 94, 38 |
| Conread position: | 866-1022 |
| Cow position: | chrX:17796827-17796669 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 6, 40 |
Show alignments to all cow chromosomes.