Cow genome map


           Conread name:
           Ss1.1-Lym1-jns06_G12.r.3
        

               Conread position:
               12-221
               

               Cow position:
               chr5:3650260-3650051 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               56, 157
               

               Conread position:
               16-226
               

               Cow position:
               chr5:1106679-1106886 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               141
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               96, 0
               

               Conread position:
               18-209
               

               Cow position:
               chr5:63093592-63093785 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               134
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               18-221
               

               Cow position:
               chr5:43403880-43403677 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               144
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               52, 157
               

               Conread position:
               18-240
               

               Cow position:
               chr5:40126346-40126566 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               156
               

               Alignm E-value:
               8e-29
               

               Alignm gaps (pig, cow):
               41, 48
               

               Conread position:
               19-190
               

               Cow position:
               chr5:6716710-6716533 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               133
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               12, 31
               

               Conread position:
               19-221
               

               Cow position:
               chr5:55115473-55115673 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               143
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               51, 153
               

               Conread position:
               20-220
               

               Cow position:
               chr5:38426983-38426783 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               147
               

               Alignm E-value:
               9e-30
               

               Alignm gaps (pig, cow):
               52, 138
               

               Conread position:
               23-167
               

               Cow position:
               chr5:22738722-22738863 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               111
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               23-220
               

               Cow position:
               chr5:41425407-41425211 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               139
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               12, 120
               

               Conread position:
               39-207
               

               Cow position:
               chr5:54133025-54133192 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               124
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               33, 144
               
Show alignments to all cow chromosomes.