Cow genome map
| Conread name: | Ss1.1-Lym1-jns87_C09.f.5 |
| Conread position: | 103-423 |
| Cow position: | chr5:59793852-59793532 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 103-423 |
| Cow position: | chr5:59797101-59796781 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 181 |
| Conread position: | 103-423 |
| Cow position: | chr5:61296786-61297106 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 109-423 |
| Cow position: | chr5:59857531-59857215 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 292 |
| Conread position: | 109-423 |
| Cow position: | chr5:61246358-61246672 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 119-423 |
| Cow position: | chr5:59775597-59775293 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 119-423 |
| Cow position: | chr5:59812982-59812678 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 119-423 |
| Cow position: | chr5:61228371-61228675 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 119-423 |
| Cow position: | chr5:61237393-61237697 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 119-423 |
| Cow position: | chr5:61306137-61306441 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 119-430 |
| Cow position: | chr5:61285749-61286059 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 0 |
| Conread position: | 155-423 |
| Cow position: | chr5:61248731-61248999 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 155-423 |
| Cow position: | chr5:61308490-61308758 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 755-1053 |
| Cow position: | chr5:61248701-61248999 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 247, 242 |
| Conread position: | 764-1053 |
| Cow position: | chr5:59852980-59852697 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 204 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 199, 0 |
| Conread position: | 764-1055 |
| Cow position: | chr5:61306152-61306443 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 135, 154 |
| Conread position: | 766-1053 |
| Cow position: | chr5:61308471-61308758 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 236, 231 |
| Conread position: | 779-1055 |
| Cow position: | chr5:59793806-59793530 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 152, 145 |
| Conread position: | 779-1055 |
| Cow position: | chr5:59797055-59796779 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 229, 237 |
| Conread position: | 783-1055 |
| Cow position: | chr5:61246402-61246674 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 186 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 116, 135 |
| Conread position: | 783-1055 |
| Cow position: | chr5:61285783-61286055 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 116, 135 |
| Conread position: | 791-1055 |
| Cow position: | chr5:59775555-59775291 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 108, 136 |
| Conread position: | 791-1055 |
| Cow position: | chr5:59812940-59812676 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 108, 136 |
| Conread position: | 791-1055 |
| Cow position: | chr5:61228413-61228677 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 108, 136 |
| Conread position: | 791-1055 |
| Cow position: | chr5:61296844-61297108 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 184 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 204, 225 |
Show alignments to all cow chromosomes.