Cow genome map
| Conread name: | Ss1.1-Mixn-0004k05.5 |
| Conread position: | 127-477 |
| Cow position: | chr14:3080004-3079657 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 221 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 151, 11 |
| Conread position: | 131-641 |
| Cow position: | chr14:3128017-3127511 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 324 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 134, 8 |
| Conread position: | 134-640 |
| Cow position: | chr14:680735-681237 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 311 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 144, 6 |
| Conread position: | 134-641 |
| Cow position: | chr14:3080586-3080083 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 311 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 186, 6 |
| Conread position: | 135-568 |
| Cow position: | chr14:25895878-25896308 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 259 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 51, 78 |
| Conread position: | 135-569 |
| Cow position: | chr14:25895374-25895805 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 273 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 135, 121 |
| Conread position: | 135-580 |
| Cow position: | chr14:447765-448207 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 263 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 189, 159 |
| Conread position: | 135-580 |
| Cow position: | chr14:3061733-3061291 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 263 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 161, 0 |
| Conread position: | 135-590 |
| Cow position: | chr14:3080166-3079715 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 290 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 143, 128 |
| Conread position: | 135-639 |
| Cow position: | chr14:3127762-3127260 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 313 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 185, 161 |
| Conread position: | 135-640 |
| Cow position: | chr14:3080502-3080000 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 135 |
| Conread position: | 135-640 |
| Cow position: | chr14:25836391-25836893 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 303 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 79, 73 |
| Conread position: | 135-641 |
| Cow position: | chr14:447681-448184 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 80 |
| Conread position: | 135-641 |
| Cow position: | chr14:3080250-3079747 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 161 |
| Conread position: | 135-641 |
| Cow position: | chr14:3080418-3079915 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 308 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 216, 128 |
| Conread position: | 135-641 |
| Cow position: | chr14:3080754-3080251 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 158 |
| Conread position: | 135-641 |
| Cow position: | chr14:3080921-3080419 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 327 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 37, 5 |
| Conread position: | 135-641 |
| Cow position: | chr14:3127846-3127343 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 319 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 143, 128 |
| Conread position: | 135-641 |
| Cow position: | chr14:3128098-3127595 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 79 |
| Conread position: | 135-641 |
| Cow position: | chr14:25895122-25895625 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 304 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 43, 47 |
| Conread position: | 136-638 |
| Cow position: | chr14:680232-680731 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 308 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 142, 127 |
| Conread position: | 138-539 |
| Cow position: | chr14:447852-448250 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 158, 0 |
| Conread position: | 139-641 |
| Cow position: | chr14:433822-434321 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 314 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 139, 131 |
| Conread position: | 141-547 |
| Cow position: | chr14:3156080-3156483 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 270 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 24, 35 |
| Conread position: | 149-586 |
| Cow position: | chr14:680833-681266 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 265 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 341, 144 |
| Conread position: | 149-635 |
| Cow position: | chr14:433916-434400 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 288 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 446, 121 |
| Conread position: | 150-642 |
| Cow position: | chr14:680498-680987 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 309 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 106, 127 |
| Conread position: | 238-640 |
| Cow position: | chr14:25895729-25896128 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 245 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 200, 58 |
| Conread position: | 269-641 |
| Cow position: | chr14:25877298-25877670 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 231 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 98, 77 |
| Conread position: | 277-568 |
| Cow position: | chr14:25895012-25895300 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 185 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 39, 16 |
| Conread position: | 277-641 |
| Cow position: | chr14:3155475-3155836 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 240 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 42, 19 |
| Conread position: | 287-641 |
| Cow position: | chr14:25876563-25876914 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 223 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 148, 16 |
| Conread position: | 295-641 |
| Cow position: | chr14:25895447-25895793 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 69, 51 |
| Conread position: | 297-569 |
| Cow position: | chr14:25877495-25877766 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 140, 6 |
| Conread position: | 297-590 |
| Cow position: | chr14:3156066-3156357 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 23, 12 |
| Conread position: | 297-634 |
| Cow position: | chr14:25860444-25860780 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 140, 6 |
| Conread position: | 297-639 |
| Cow position: | chr14:3061070-3060728 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 209 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 309, 285 |
| Conread position: | 297-640 |
| Cow position: | chr14:25860024-25860366 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 138, 11 |
| Conread position: | 297-641 |
| Cow position: | chr14:25877075-25877418 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 138, 11 |
| Conread position: | 297-641 |
| Cow position: | chr14:25894946-25895289 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 220 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 32, 6 |
| Conread position: | 301-517 |
| Cow position: | chr14:420646-420862 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 301-590 |
| Cow position: | chr14:25836218-25836507 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 179 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 301-620 |
| Cow position: | chr14:25836890-25837209 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 66, 45 |
| Conread position: | 301-634 |
| Cow position: | chr14:3155412-3155745 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 146 |
| Conread position: | 301-638 |
| Cow position: | chr14:680478-680815 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 301-639 |
| Cow position: | chr14:3061150-3060812 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 219 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 19, 23 |
| Conread position: | 301-640 |
| Cow position: | chr14:25836806-25837145 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 18, 23 |
| Conread position: | 301-640 |
| Cow position: | chr14:25859271-25859610 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 212 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 6, 23 |
| Conread position: | 301-641 |
| Cow position: | chr14:3128103-3127763 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 112, 97 |
| Conread position: | 301-641 |
| Cow position: | chr14:3155901-3156241 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 19, 23 |
| Conread position: | 301-641 |
| Cow position: | chr14:25895621-25895961 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 227 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 28, 17 |
| Conread position: | 314-634 |
| Cow position: | chr14:3061725-3061405 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 205 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 205, 218 |
| Conread position: | 314-641 |
| Cow position: | chr14:3061391-3061062 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 207 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 15, 136 |
| Conread position: | 323-560 |
| Cow position: | chr14:3079897-3079660 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 323-634 |
| Cow position: | chr14:25895979-25896290 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 324-640 |
| Cow position: | chr14:25877437-25877753 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 194 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 33, 40 |
| Conread position: | 324-641 |
| Cow position: | chr14:3128164-3127847 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 205 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 281, 258 |
| Conread position: | 353-562 |
| Cow position: | chr14:3061182-3060973 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 360-641 |
| Cow position: | chr14:420623-420902 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 362-638 |
| Cow position: | chr14:447569-447845 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 197 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 142, 136 |
| Conread position: | 363-640 |
| Cow position: | chr14:25859585-25859862 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 74, 82 |
| Conread position: | 381-639 |
| Cow position: | chr14:3155408-3155666 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 54, 67 |
Show alignments to all cow chromosomes.