Cow genome map
| Conread name: | Ss1.1-Mixn-0004k05.5 |
| Conread position: | 135-590 |
| Cow position: | chr22:12458517-12458066 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 278 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 74, 81 |
| Conread position: | 135-640 |
| Cow position: | chr22:12399837-12399335 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 313 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 121, 132 |
| Conread position: | 144-641 |
| Cow position: | chr22:12419011-12418517 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 304 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 125, 118 |
| Conread position: | 269-644 |
| Cow position: | chr22:12432442-12432069 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 236 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 13, 37 |
| Conread position: | 277-494 |
| Cow position: | chr22:11666680-11666894 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 73, 19 |
| Conread position: | 277-590 |
| Cow position: | chr22:11701334-11701643 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 84, 19 |
| Conread position: | 277-640 |
| Cow position: | chr22:11701166-11701526 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 72, 19 |
| Conread position: | 277-640 |
| Cow position: | chr22:12476324-12475964 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 233 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 42, 26 |
| Conread position: | 277-640 |
| Cow position: | chr22:12498935-12499295 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 236 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 42, 26 |
| Conread position: | 283-589 |
| Cow position: | chr22:14429717-14430020 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 195 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 155, 17 |
| Conread position: | 288-629 |
| Cow position: | chr22:12418783-12418445 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 244, 15 |
| Conread position: | 290-641 |
| Cow position: | chr22:11640850-11641200 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 220 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 304, 12 |
| Conread position: | 292-641 |
| Cow position: | chr22:12458615-12458266 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 28, 32 |
| Conread position: | 295-590 |
| Cow position: | chr22:12431828-12431533 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 187 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 45, 60 |
| Conread position: | 297-640 |
| Cow position: | chr22:12475718-12475376 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 23, 12 |
| Conread position: | 297-640 |
| Cow position: | chr22:12499541-12499883 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 219 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 23, 12 |
| Conread position: | 297-641 |
| Cow position: | chr22:12399257-12398914 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 223 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 46, 12 |
| Conread position: | 301-584 |
| Cow position: | chr22:12431234-12430951 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 19, 23 |
| Conread position: | 301-592 |
| Cow position: | chr22:14467977-14468267 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 124, 111 |
| Conread position: | 301-640 |
| Cow position: | chr22:11640944-11641283 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 48, 52 |
| Conread position: | 301-640 |
| Cow position: | chr22:11641028-11641367 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 212 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 41, 52 |
| Conread position: | 301-640 |
| Cow position: | chr22:12385328-12384989 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 19, 23 |
| Conread position: | 301-640 |
| Cow position: | chr22:12499376-12499715 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 19, 24 |
| Conread position: | 301-640 |
| Cow position: | chr22:46654099-46654438 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 119, 101 |
| Conread position: | 301-641 |
| Cow position: | chr22:12399338-12398998 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 223 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 126, 114 |
| Conread position: | 301-641 |
| Cow position: | chr22:14429816-14430156 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 304, 281 |
| Conread position: | 308-635 |
| Cow position: | chr22:12419018-12418690 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 287, 274 |
| Conread position: | 324-641 |
| Cow position: | chr22:11701126-11701443 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 198 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 271, 258 |
| Conread position: | 324-641 |
| Cow position: | chr22:12399147-12398830 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 119, 124 |
| Conread position: | 325-641 |
| Cow position: | chr22:11640716-11641032 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 206 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 110, 122 |
| Conread position: | 328-640 |
| Cow position: | chr22:11640802-11641115 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 351-640 |
| Cow position: | chr22:12498922-12499211 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 139, 135 |
| Conread position: | 351-641 |
| Cow position: | chr22:12476337-12476047 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 191 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 139, 135 |
| Conread position: | 354-644 |
| Cow position: | chr22:12399453-12399165 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 84, 61 |
| Conread position: | 363-640 |
| Cow position: | chr22:12458124-12457847 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 57, 39 |
| Conread position: | 367-640 |
| Cow position: | chr22:12458624-12458351 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 81, 76 |
| Conread position: | 381-640 |
| Cow position: | chr22:12432498-12432239 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 207, 201 |
| Conread position: | 382-643 |
| Cow position: | chr22:12458021-12457760 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 58, 33 |
Show alignments to all cow chromosomes.