Cow genome map

Conread name: Ss1.1-Mixn-0004k05.5

Conread position: 133-590
Cow position: chr25:25652865-25653317 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 289
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 51, 7

Conread position: 134-629
Cow position: chr25:22235834-22236326 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 294
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 385, 169

Conread position: 135-546
Cow position: chr25:34763336-34763741 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 267
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 119, 113

Conread position: 135-568
Cow position: chr25:36800889-36801319 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 268
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 74, 83

Conread position: 135-589
Cow position: chr25:3664021-3664472 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 277
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 143, 128

Conread position: 135-589
Cow position: chr25:36800805-36801256 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 281
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 74, 80

Conread position: 135-634
Cow position: chr25:25652446-25652942 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 73

Conread position: 135-638
Cow position: chr25:34763003-34763497 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 322
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 52, 57

Conread position: 135-640
Cow position: chr25:326587-327095 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 306
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 79, 72

Conread position: 135-640
Cow position: chr25:326671-327179 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 320
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 176, 160

Conread position: 135-640
Cow position: chr25:25652782-25653284 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 316
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 49, 45

Conread position: 135-640
Cow position: chr25:33157383-33156881 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 128

Conread position: 135-640
Cow position: chr25:33299073-33299575 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 305
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 74, 80

Conread position: 135-640
Cow position: chr25:34447280-34447775 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 301
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 185, 170

Conread position: 135-640
Cow position: chr25:34769866-34769364 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 305
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 300, 161

Conread position: 135-641
Cow position: chr25:25652194-25652697 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 314
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 186, 161

Conread position: 135-641
Cow position: chr25:25652698-25653201 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 324
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 143, 128

Conread position: 135-641
Cow position: chr25:33157299-33156796 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 145

Conread position: 135-641
Cow position: chr25:33298653-33299156 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 313
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 38, 48

Conread position: 135-641
Cow position: chr25:33298737-33299240 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 320
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 72, 80

Conread position: 135-641
Cow position: chr25:34473513-34474013 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 310
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 113, 136

Conread position: 135-691
Cow position: chr25:326755-327316 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 479
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 0

Conread position: 137-590
Cow position: chr25:33144857-33145303 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 273
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 165, 0

Conread position: 138-628
Cow position: chr25:34473600-34474084 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 286
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 181, 118

Conread position: 138-641
Cow position: chr25:3663940-3664440 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 294
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 105, 0

Conread position: 138-641
Cow position: chr25:33298992-33299492 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 305
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 117, 143

Conread position: 139-641
Cow position: chr25:25652282-25652781 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 318
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 180, 157

Conread position: 143-555
Cow position: chr25:36801557-36801966 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 260
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 66, 72

Conread position: 143-560
Cow position: chr25:3636548-3636134 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 250
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 347, 153

Conread position: 143-643
Cow position: chr25:33144947-33145439 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 308
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 211, 90

Conread position: 143-644
Cow position: chr25:34762927-34763422 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 309
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 132, 103

Conread position: 144-628
Cow position: chr25:326344-326825 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 74

Conread position: 144-640
Cow position: chr25:34770025-34769532 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 310
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 117, 124

Conread position: 150-641
Cow position: chr25:33299256-33299744 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 301
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 57, 66

Conread position: 153-592
Cow position: chr25:33299427-33299858 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 266
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 56, 62

Conread position: 233-634
Cow position: chr25:34770104-34769706 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 262
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 26, 46

Conread position: 233-640
Cow position: chr25:23420403-23420807 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 261
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 121, 63

Conread position: 234-640
Cow position: chr25:34769683-34769280 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 270
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 27, 34

Conread position: 270-641
Cow position: chr25:34762886-34763251 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 246
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 49, 23

Conread position: 271-641
Cow position: chr25:36800689-36801056 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 238
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 48, 32

Conread position: 273-641
Cow position: chr25:33299043-33299408 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 237
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 340, 23

Conread position: 274-633
Cow position: chr25:33529072-33529431 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 213
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 277-631
Cow position: chr25:33127866-33128217 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 223
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 28, 0

Conread position: 277-641
Cow position: chr25:34769976-34769615 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 239
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 43, 26

Conread position: 279-633
Cow position: chr25:3664249-3664600 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 223
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 32, 0

Conread position: 284-640
Cow position: chr25:22235816-22236169 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 235
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 36, 12

Conread position: 285-607
Cow position: chr25:414624-414308 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 213
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 69, 17

Conread position: 285-622
Cow position: chr25:3676064-3676398 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 209
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 66, 26

Conread position: 292-634
Cow position: chr25:3663923-3664265 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 219
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 203, 208

Conread position: 295-641
Cow position: chr25:33298726-33299072 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 233
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 24, 30

Conread position: 295-641
Cow position: chr25:34770129-34769783 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 219
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 20, 13

Conread position: 295-641
Cow position: chr25:36801454-36801800 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 222
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 293, 287

Conread position: 296-641
Cow position: chr25:36800795-36801140 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 228
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 24, 28

Conread position: 297-639
Cow position: chr25:33298560-33298902 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 220
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 296, 304

Conread position: 297-639
Cow position: chr25:34447103-34447445 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 222
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 23, 27

Conread position: 299-641
Cow position: chr25:326328-326670 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 213
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 138, 124

Conread position: 299-641
Cow position: chr25:22235747-22236086 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 215
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 100, 41

Conread position: 301-561
Cow position: chr25:33127971-33128231 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 175
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 119, 103

Conread position: 301-569
Cow position: chr25:34733924-34733656 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 172
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 301-584
Cow position: chr25:326582-326865 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 191
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 301-590
Cow position: chr25:33127803-33128091 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 199
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 19, 23

Conread position: 301-629
Cow position: chr25:36800884-36801212 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 223
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 19, 23

Conread position: 301-630
Cow position: chr25:33299488-33299817 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 208
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 231, 226

Conread position: 301-630
Cow position: chr25:36801628-36801957 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 209
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 204, 197

Conread position: 301-631
Cow position: chr25:34447023-34447353 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 208
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 294, 282

Conread position: 301-634
Cow position: chr25:36844619-36844295 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 215
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 18, 24

Conread position: 301-635
Cow position: chr25:3664016-3664350 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 213
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 18, 24

Conread position: 301-640
Cow position: chr25:23420384-23420723 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 221
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 19, 24

Conread position: 301-640
Cow position: chr25:36801376-36801715 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 215
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 19, 23

Conread position: 301-641
Cow position: chr25:33157388-33157048 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 232
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 139, 134

Conread position: 301-641
Cow position: chr25:36801544-36801884 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 231
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 204, 197

Conread position: 302-641
Cow position: chr25:33298985-33299324 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 223
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 42, 52

Conread position: 313-641
Cow position: chr25:4657368-4657040 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 206
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 36, 26

Conread position: 319-589
Cow position: chr25:34733989-34733720 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 183
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 38, 5

Conread position: 321-630
Cow position: chr25:34762850-34763156 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 201
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 268, 0

Conread position: 323-562
Cow position: chr25:33506771-33507010 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 155
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 323-589
Cow position: chr25:414673-414409 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 175
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 31, 26

Conread position: 323-634
Cow position: chr25:3676015-3676326 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 197
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 90, 79

Conread position: 323-640
Cow position: chr25:34732501-34732184 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 203
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 198, 175

Conread position: 323-641
Cow position: chr25:4657442-4657124 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 219
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 284, 259

Conread position: 323-645
Cow position: chr25:3636287-3635965 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 209
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 324-629
Cow position: chr25:33530505-33530810 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 194
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 324-634
Cow position: chr25:33127742-33128052 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 202
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 271, 258

Conread position: 324-640
Cow position: chr25:33305378-33305067 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 203
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 111, 60

Conread position: 324-640
Cow position: chr25:34446962-34447278 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 207
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 114, 123

Conread position: 324-641
Cow position: chr25:33305295-33304981 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 200
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 208, 173

Conread position: 324-641
Cow position: chr25:34732584-34732267 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 205
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 109, 124

Conread position: 327-640
Cow position: chr25:33127661-33127974 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 199
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 49, 37

Conread position: 328-634
Cow position: chr25:23420327-23420633 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 204
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 105, 120

Conread position: 334-634
Cow position: chr25:33530431-33530731 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 197
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 352-640
Cow position: chr25:33157421-33157133 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 196
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 83, 96

Conread position: 363-635
Cow position: chr25:427308-427581 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 178
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 141, 153

Conread position: 363-641
Cow position: chr25:23267272-23266994 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 180
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 128, 52

Conread position: 374-639
Cow position: chr25:326485-326752 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 187
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 8, 23

Conread position: 378-640
Cow position: chr25:36844626-36844364 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 174
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 384-641
Cow position: chr25:25652188-25652445 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 169
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 969-1328
Cow position: chr25:327589-327973 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 273
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 55, 91

Conread position: 1181-1328
Cow position: chr25:35173130-35172976 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 121
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 60, 0

Show alignments to all cow chromosomes.