Cow genome map
| Conread name: | Ss1.1-Mixn-0006b24.5 |
| Conread position: | 294-865 |
| Cow position: | chr14:3101274-3100713 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 338 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 19, 43 |
| Conread position: | 317-873 |
| Cow position: | chr14:3080766-3080210 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 326 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 226, 219 |
| Conread position: | 321-592 |
| Cow position: | chr14:680979-681250 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 179 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 222, 215 |
| Conread position: | 321-698 |
| Cow position: | chr14:680895-681272 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 272, 279 |
| Conread position: | 321-702 |
| Cow position: | chr14:3127686-3127305 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 245 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 137, 128 |
| Conread position: | 331-696 |
| Cow position: | chr14:25784362-25784727 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 221 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 209, 203 |
| Conread position: | 331-696 |
| Cow position: | chr14:25795256-25794891 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 119, 131 |
| Conread position: | 331-781 |
| Cow position: | chr14:25836729-25837179 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 279 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 331-855 |
| Cow position: | chr14:447599-448123 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 312 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 56, 39 |
| Conread position: | 331-858 |
| Cow position: | chr14:25783606-25784133 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 312 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 117, 131 |
| Conread position: | 331-858 |
| Cow position: | chr14:25783942-25784469 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 321 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 200, 191 |
| Conread position: | 331-869 |
| Cow position: | chr14:25794752-25794213 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 315 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 310, 317 |
| Conread position: | 331-869 |
| Cow position: | chr14:25795088-25794550 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 323 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 130, 116 |
| Conread position: | 331-869 |
| Cow position: | chr14:25860118-25860656 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 319 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 297, 284 |
| Conread position: | 331-871 |
| Cow position: | chr14:3127928-3127388 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 336 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 34, 46 |
| Conread position: | 331-871 |
| Cow position: | chr14:25860034-25860574 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 327 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 43, 56 |
| Conread position: | 331-871 |
| Cow position: | chr14:25877085-25877625 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 325 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 43, 56 |
| Conread position: | 331-871 |
| Cow position: | chr14:25895292-25895832 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 317 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 117, 146 |
| Conread position: | 331-873 |
| Cow position: | chr14:3080416-3079874 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 327 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 205, 224 |
| Conread position: | 331-873 |
| Cow position: | chr14:25859362-25859904 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 322 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 44, 56 |
| Conread position: | 332-704 |
| Cow position: | chr14:3155420-3155792 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 233 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 279, 257 |
| Conread position: | 332-753 |
| Cow position: | chr14:25860287-25860708 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 265 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 128, 112 |
| Conread position: | 332-768 |
| Cow position: | chr14:25794919-25794483 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 269 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 117, 130 |
| Conread position: | 332-776 |
| Cow position: | chr14:25784195-25784639 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 269 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 46, 30 |
| Conread position: | 332-858 |
| Cow position: | chr14:25783775-25784301 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 319 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 118, 130 |
| Conread position: | 332-866 |
| Cow position: | chr14:25836310-25836844 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 319 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 309, 313 |
| Conread position: | 332-869 |
| Cow position: | chr14:25783523-25784060 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 315 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 309, 315 |
| Conread position: | 332-871 |
| Cow position: | chr14:3080247-3079708 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 316 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 310, 316 |
| Conread position: | 332-871 |
| Cow position: | chr14:3101157-3100623 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 317 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 310, 97 |
| Conread position: | 332-873 |
| Cow position: | chr14:680654-681195 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 322 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 204, 215 |
| Conread position: | 332-873 |
| Cow position: | chr14:25836142-25836683 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 324 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 309, 313 |
| Conread position: | 334-867 |
| Cow position: | chr14:25784113-25784646 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 332 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 136, 113 |
| Conread position: | 335-867 |
| Cow position: | chr14:680741-681273 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 322 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 136, 115 |
| Conread position: | 337-869 |
| Cow position: | chr14:25876335-25876867 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 318 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 48, 44 |
| Conread position: | 337-869 |
| Cow position: | chr14:25895634-25896166 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 317 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 89, 96 |
| Conread position: | 338-787 |
| Cow position: | chr14:680828-681279 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 276 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 222, 227 |
| Conread position: | 338-858 |
| Cow position: | chr14:3128005-3127485 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 319 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 210, 228 |
| Conread position: | 338-865 |
| Cow position: | chr14:25895467-25895994 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 312 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 87, 94 |
| Conread position: | 338-899 |
| Cow position: | chr14:25877260-25877821 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 334 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 37, 55 |
| Conread position: | 342-753 |
| Cow position: | chr14:25877348-25877759 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 267 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 118, 105 |
| Conread position: | 342-844 |
| Cow position: | chr14:25783365-25783867 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 308 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 78, 61 |
| Conread position: | 342-855 |
| Cow position: | chr14:447694-448207 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 304 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 116, 108 |
| Conread position: | 342-864 |
| Cow position: | chr14:25794993-25794471 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 314 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 128, 105 |
| Conread position: | 342-864 |
| Cow position: | chr14:25877012-25877534 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 308 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 43, 24 |
| Conread position: | 342-866 |
| Cow position: | chr14:25859457-25859981 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 300 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 118, 108 |
| Conread position: | 342-873 |
| Cow position: | chr14:25876592-25877123 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 327 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 84, 91 |
| Conread position: | 344-864 |
| Cow position: | chr14:25859291-25859811 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 319 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 34, 19 |
| Conread position: | 344-864 |
| Cow position: | chr14:25859963-25860483 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 306 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 41, 29 |
| Conread position: | 345-858 |
| Cow position: | chr14:25795158-25794645 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 300 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 119, 126 |
| Conread position: | 346-872 |
| Cow position: | chr14:25876680-25877206 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 313 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 458, 436 |
| Conread position: | 346-898 |
| Cow position: | chr14:25836660-25837212 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 335 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 29, 41 |
| Conread position: | 347-871 |
| Cow position: | chr14:25836241-25836765 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 320 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 33, 40 |
| Conread position: | 386-781 |
| Cow position: | chr14:25910896-25911291 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 244 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 121, 117 |
| Conread position: | 386-865 |
| Cow position: | chr14:25836448-25836927 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 47 |
| Conread position: | 386-871 |
| Cow position: | chr14:25859837-25860322 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 295 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 121, 117 |
| Conread position: | 386-873 |
| Cow position: | chr14:25859921-25860408 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 297 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 171, 180 |
| Conread position: | 390-838 |
| Cow position: | chr14:447574-448022 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 270 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 251, 227 |
| Conread position: | 390-871 |
| Cow position: | chr14:3080273-3079792 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 289 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 240, 231 |
| Conread position: | 392-866 |
| Cow position: | chr14:25910818-25911292 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 281 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 240, 228 |
| Conread position: | 394-865 |
| Cow position: | chr14:25859173-25859644 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 288 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 203, 218 |
| Conread position: | 394-894 |
| Cow position: | chr14:25859257-25859757 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 299 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 197, 192 |
| Conread position: | 396-700 |
| Cow position: | chr14:25860435-25860739 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 242, 237 |
| Conread position: | 396-872 |
| Cow position: | chr14:25859679-25860155 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 285 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 240, 224 |
| Conread position: | 460-882 |
| Cow position: | chr14:3101449-3101028 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 257 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 11, 117 |
| Conread position: | 470-898 |
| Cow position: | chr14:447570-447998 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 252 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 162, 179 |
| Conread position: | 488-897 |
| Cow position: | chr14:3155408-3155817 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 249 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 135, 119 |
| Conread position: | 491-865 |
| Cow position: | chr14:25836049-25836423 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 150, 154 |
Show alignments to all cow chromosomes.