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Cow genome map

           
Conread name:
           
Ss1.1-Mixn-0006b24.5
        

               
Conread position:
               
270-872
               

               
Cow position:
               
chr18:42791594-42792188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
609
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
115, 18
               

               
Conread position:
               
316-593
               

               
Cow position:
               
chr18:56494177-56494453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
316-608
               

               
Cow position:
               
chr18:53509739-53510027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
143, 8
               

               
Conread position:
               
316-867
               

               
Cow position:
               
chr18:55008808-55009356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
60, 8
               

               
Conread position:
               
316-868
               

               
Cow position:
               
chr18:55017961-55018512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
558
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
136, 16
               

               
Conread position:
               
319-696
               

               
Cow position:
               
chr18:50271714-50272089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
225, 18
               

               
Conread position:
               
319-873
               

               
Cow position:
               
chr18:53636128-53635575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
558
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
225, 5
               

               
Conread position:
               
320-865
               

               
Cow position:
               
chr18:53610383-53609838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
153, 161
               

               
Conread position:
               
321-690
               

               
Cow position:
               
chr18:42674816-42674447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
45, 65
               

               
Conread position:
               
321-775
               

               
Cow position:
               
chr18:43168045-43168499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
56, 45
               

               
Conread position:
               
321-862
               

               
Cow position:
               
chr18:53586746-53586206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
217, 201
               

               
Conread position:
               
321-869
               

               
Cow position:
               
chr18:42959962-42959423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
272, 207
               

               
Conread position:
               
321-870
               

               
Cow position:
               
chr18:56128206-56128755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
554
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
302, 269
               

               
Conread position:
               
321-893
               

               
Cow position:
               
chr18:53509407-53509979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
305, 286
               

               
Conread position:
               
321-893
               

               
Cow position:
               
chr18:53525861-53526433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
575
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
388, 398
               

               
Conread position:
               
321-899
               

               
Cow position:
               
chr18:55523309-55523887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
584
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
217, 211
               

               
Conread position:
               
323-670
               

               
Cow position:
               
chr18:55523983-55524330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
64, 57
               

               
Conread position:
               
323-864
               

               
Cow position:
               
chr18:53559677-53560218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
314, 297
               

               
Conread position:
               
324-529
               

               
Cow position:
               
chr18:56247313-56247111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
172, 0
               

               
Conread position:
               
324-592
               

               
Cow position:
               
chr18:55524068-55524336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
324-656
               

               
Cow position:
               
chr18:53560434-53560766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
217, 209
               

               
Conread position:
               
324-696
               

               
Cow position:
               
chr18:54980236-54980607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
35, 49
               

               
Conread position:
               
324-699
               

               
Cow position:
               
chr18:33064010-33063635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
140, 111
               

               
Conread position:
               
324-699
               

               
Cow position:
               
chr18:40324292-40323918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
61, 50
               

               
Conread position:
               
324-704
               

               
Cow position:
               
chr18:49032622-49032242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
134, 104
               

               
Conread position:
               
324-706
               

               
Cow position:
               
chr18:53560350-53560732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
317, 323
               

               
Conread position:
               
324-706
               

               
Cow position:
               
chr18:53586407-53586026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
377, 0
               

               
Conread position:
               
324-707
               

               
Cow position:
               
chr18:40075279-40075661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
183, 170
               

               
Conread position:
               
324-759
               

               
Cow position:
               
chr18:55523900-55524335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
56, 62
               

               
Conread position:
               
324-768
               

               
Cow position:
               
chr18:56434385-56434828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
314, 279
               

               
Conread position:
               
324-774
               

               
Cow position:
               
chr18:56434217-56434667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
140, 147
               

               
Conread position:
               
324-784
               

               
Cow position:
               
chr18:54968042-54968502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
35, 49
               

               
Conread position:
               
324-788
               

               
Cow position:
               
chr18:40306509-40306974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
223, 195
               

               
Conread position:
               
324-828
               

               
Cow position:
               
chr18:54993496-54993997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
141, 147
               

               
Conread position:
               
324-844
               

               
Cow position:
               
chr18:55523816-55524336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
45, 35
               

               
Conread position:
               
324-858
               

               
Cow position:
               
chr18:42985304-42984770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
41, 55
               

               
Conread position:
               
324-858
               

               
Cow position:
               
chr18:53498225-53498762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
72, 227
               

               
Conread position:
               
324-858
               

               
Cow position:
               
chr18:54993244-54993778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
541
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
136, 124
               

               
Conread position:
               
324-864
               

               
Cow position:
               
chr18:42985556-42985017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
133, 126
               

               
Conread position:
               
324-864
               

               
Cow position:
               
chr18:53560014-53560554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
299, 279
               

               
Conread position:
               
324-864
               

               
Cow position:
               
chr18:53586827-53586287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
134, 125
               

               
Conread position:
               
324-864
               

               
Cow position:
               
chr18:54966955-54967495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
138, 124
               

               
Conread position:
               
324-866
               

               
Cow position:
               
chr18:55523564-55524106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
293, 283
               

               
Conread position:
               
324-868
               

               
Cow position:
               
chr18:50848507-50849051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
551
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
137, 113
               

               
Conread position:
               
324-871
               

               
Cow position:
               
chr18:41949260-41948713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
136, 113
               

               
Conread position:
               
324-872
               

               
Cow position:
               
chr18:50848927-50849475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
556
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
147, 131
               

               
Conread position:
               
324-873
               

               
Cow position:
               
chr18:54967876-54968423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
556
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
41, 51
               

               
Conread position:
               
324-874
               

               
Cow position:
               
chr18:42791558-42792106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
142, 13
               

               
Conread position:
               
325-670
               

               
Cow position:
               
chr18:56434134-56434479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
139, 146
               

               
Conread position:
               
325-691
               

               
Cow position:
               
chr18:55066769-55066403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
325-858
               

               
Cow position:
               
chr18:53559931-53560464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
537
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
305, 295
               

               
Conread position:
               
325-859
               

               
Cow position:
               
chr18:54979565-54980099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
46, 52
               

               
Conread position:
               
325-859
               

               
Cow position:
               
chr18:55008397-55008930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
10, 155
               

               
Conread position:
               
325-859
               

               
Cow position:
               
chr18:55008564-55009098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
46, 52
               

               
Conread position:
               
325-864
               

               
Cow position:
               
chr18:55008481-55009019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
11, 75
               

               
Conread position:
               
325-865
               

               
Cow position:
               
chr18:40074943-40075484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
9, 170
               

               
Conread position:
               
325-866
               

               
Cow position:
               
chr18:56493849-56494390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
316, 324
               

               
Conread position:
               
325-868
               

               
Cow position:
               
chr18:54966871-54967415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
551
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
10, 221
               

               
Conread position:
               
325-868
               

               
Cow position:
               
chr18:54993160-54993704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
9, 40
               

               
Conread position:
               
325-868
               

               
Cow position:
               
chr18:55017719-55018260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
10, 58
               

               
Conread position:
               
325-868
               

               
Cow position:
               
chr18:55017885-55018428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
141, 111
               

               
Conread position:
               
325-869
               

               
Cow position:
               
chr18:55017800-55018345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
9, 125
               

               
Conread position:
               
325-899
               

               
Cow position:
               
chr18:53586911-53586336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
578
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
9, 41
               

               
Conread position:
               
326-866
               

               
Cow position:
               
chr18:33064428-33063888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
145, 135
               

               
Conread position:
               
330-699
               

               
Cow position:
               
chr18:43022641-43022272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
122, 132
               

               
Conread position:
               
330-777
               

               
Cow position:
               
chr18:40324874-40324428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
330-780
               

               
Cow position:
               
chr18:40086170-40085727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
311, 159
               

               
Conread position:
               
330-858
               

               
Cow position:
               
chr18:40324538-40324010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
56, 40
               

               
Conread position:
               
330-864
               

               
Cow position:
               
chr18:43175346-43174812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
537
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
285, 277
               

               
Conread position:
               
330-869
               

               
Cow position:
               
chr18:43022893-43022354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
311, 317
               

               
Conread position:
               
330-871
               

               
Cow position:
               
chr18:40306599-40307140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
135, 107
               

               
Conread position:
               
331-531
               

               
Cow position:
               
chr18:40085925-40085724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
183, 0
               

               
Conread position:
               
331-536
               

               
Cow position:
               
chr18:43022220-43022015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
130, 119
               

               
Conread position:
               
331-588
               

               
Cow position:
               
chr18:14453109-14452852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
122, 110
               

               
Conread position:
               
331-593
               

               
Cow position:
               
chr18:43174757-43174495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
129, 110
               

               
Conread position:
               
331-612
               

               
Cow position:
               
chr18:50083965-50084245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
129, 116
               

               
Conread position:
               
331-613
               

               
Cow position:
               
chr18:50246508-50246790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
45, 36
               

               
Conread position:
               
331-696
               

               
Cow position:
               
chr18:33093011-33092646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
205, 188
               

               
Conread position:
               
331-696
               

               
Cow position:
               
chr18:43048717-43048352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
127, 119
               

               
Conread position:
               
331-697
               

               
Cow position:
               
chr18:50295535-50295900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
128, 107
               

               
Conread position:
               
331-699
               

               
Cow position:
               
chr18:44240188-44240556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
118, 131
               

               
Conread position:
               
331-701
               

               
Cow position:
               
chr18:41948917-41948547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
127, 119
               

               
Conread position:
               
331-701
               

               
Cow position:
               
chr18:53635445-53635075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
129, 124
               

               
Conread position:
               
331-705
               

               
Cow position:
               
chr18:43093155-43092783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
130, 110
               

               
Conread position:
               
331-706
               

               
Cow position:
               
chr18:43093239-43092864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
42, 46
               

               
Conread position:
               
331-706
               

               
Cow position:
               
chr18:50295451-50295826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
130, 124
               

               
Conread position:
               
331-724
               

               
Cow position:
               
chr18:50099910-50100303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
42, 31
               

               
Conread position:
               
331-741
               

               
Cow position:
               
chr18:44184371-44183961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
298, 288
               

               
Conread position:
               
331-752
               

               
Cow position:
               
chr18:41948749-41948328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
129, 119
               

               
Conread position:
               
331-753
               

               
Cow position:
               
chr18:14453277-14452855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
131, 110
               

               
Conread position:
               
331-755
               

               
Cow position:
               
chr18:43174925-43174501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
126, 131
               

               
Conread position:
               
331-761
               

               
Cow position:
               
chr18:1418181-1418611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
205, 215
               

               
Conread position:
               
331-768
               

               
Cow position:
               
chr18:43119976-43119539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
44, 34
               

               
Conread position:
               
331-774
               

               
Cow position:
               
chr18:1418097-1418540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
80, 72
               

               
Conread position:
               
331-775
               

               
Cow position:
               
chr18:42837589-42837145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
55, 33
               

               
Conread position:
               
331-775
               

               
Cow position:
               
chr18:43022472-43022028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
129, 119
               

               
Conread position:
               
331-775
               

               
Cow position:
               
chr18:43022808-43022364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
129, 119
               

               
Conread position:
               
331-775
               

               
Cow position:
               
chr18:43175009-43174565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
141, 126
               

               
Conread position:
               
331-775
               

               
Cow position:
               
chr18:44240104-44240548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
129, 106
               

               
Conread position:
               
331-780
               

               
Cow position:
               
chr18:42674890-42674441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
46, 32
               

               
Conread position:
               
331-780
               

               
Cow position:
               
chr18:42984961-42984512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
56, 34
               

               
Conread position:
               
331-780
               

               
Cow position:
               
chr18:43175177-43174728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
119, 131
               

               
Conread position:
               
331-780
               

               
Cow position:
               
chr18:44184539-44184090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
140, 119
               

               
Conread position:
               
331-781
               

               
Cow position:
               
chr18:41198342-41198789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
116, 106
               

               
Conread position:
               
331-781
               

               
Cow position:
               
chr18:50058856-50058408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
129, 105
               

               
Conread position:
               
331-782
               

               
Cow position:
               
chr18:56316480-56316931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
16, 11
               

               
Conread position:
               
331-783
               

               
Cow position:
               
chr18:42791143-42791594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
280, 272
               

               
Conread position:
               
331-822
               

               
Cow position:
               
chr18:40086503-40086014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
131, 119
               

               
Conread position:
               
331-844
               

               
Cow position:
               
chr18:49033035-49032522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
133, 111
               

               
Conread position:
               
331-858
               

               
Cow position:
               
chr18:42674974-42674447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
48, 35
               

               
Conread position:
               
331-858
               

               
Cow position:
               
chr18:42744454-42743927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
200, 188
               

               
Conread position:
               
331-858
               

               
Cow position:
               
chr18:42837673-42837146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 51
               

               
Conread position:
               
331-858
               

               
Cow position:
               
chr18:43023060-43022533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
534
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
129, 119
               

               
Conread position:
               
331-858
               

               
Cow position:
               
chr18:43175093-43174566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
129, 111
               

               
Conread position:
               
331-858
               

               
Cow position:
               
chr18:44154443-44153914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
534
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
59, 275
               

               
Conread position:
               
331-864
               

               
Cow position:
               
chr18:42791983-42792516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
538
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
127, 119
               

               
Conread position:
               
331-864
               

               
Cow position:
               
chr18:42985381-42984848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
541
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 48
               

               
Conread position:
               
331-864
               

               
Cow position:
               
chr18:44184623-44184090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
536
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
380, 370
               

               
Conread position:
               
331-864
               

               
Cow position:
               
chr18:50059528-50058995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
538
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
17, 11
               

               
Conread position:
               
331-865
               

               
Cow position:
               
chr18:43093659-43093125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 48
               

               
Conread position:
               
331-865
               

               
Cow position:
               
chr18:49022491-49023023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
126, 105
               

               
Conread position:
               
331-865
               

               
Cow position:
               
chr18:50099322-50099856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
539
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
33, 42
               

               
Conread position:
               
331-866
               

               
Cow position:
               
chr18:33064171-33063636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
539
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 202
               

               
Conread position:
               
331-866
               

               
Cow position:
               
chr18:33064255-33063720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 126
               

               
Conread position:
               
331-866
               

               
Cow position:
               
chr18:42675142-42674607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
129, 105
               

               
Conread position:
               
331-866
               

               
Cow position:
               
chr18:53610540-53610005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
127, 118
               

               
Conread position:
               
331-866
               

               
Cow position:
               
chr18:56128384-56128919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
57, 40
               

               
Conread position:
               
331-869
               

               
Cow position:
               
chr18:53610288-53609750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
115, 131
               

               
Conread position:
               
331-870
               

               
Cow position:
               
chr18:40306432-40306971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
145, 116
               

               
Conread position:
               
331-870
               

               
Cow position:
               
chr18:41197502-41198041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 106
               

               
Conread position:
               
331-870
               

               
Cow position:
               
chr18:41198090-41198629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
280, 272
               

               
Conread position:
               
331-870
               

               
Cow position:
               
chr18:44154272-44153740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
129, 119
               

               
Conread position:
               
331-870
               

               
Cow position:
               
chr18:50059192-50058653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
216, 207
               

               
Conread position:
               
331-871
               

               
Cow position:
               
chr18:44398092-44397552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
48, 34
               

               
Conread position:
               
331-871
               

               
Cow position:
               
chr18:56329504-56328964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
43, 56
               

               
Conread position:
               
331-872
               

               
Cow position:
               
chr18:42744538-42743997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
281, 272
               

               
Conread position:
               
331-872
               

               
Cow position:
               
chr18:43094066-43093538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
40, 52
               

               
Conread position:
               
331-872
               

               
Cow position:
               
chr18:44398344-44397803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 119
               

               
Conread position:
               
331-872
               

               
Cow position:
               
chr18:49032699-49032158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
141, 136
               

               
Conread position:
               
331-872
               

               
Cow position:
               
chr18:49033287-49032746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
553
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
55, 34
               

               
Conread position:
               
331-872
               

               
Cow position:
               
chr18:50246004-50246545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
42, 33
               

               
Conread position:
               
331-872
               

               
Cow position:
               
chr18:56330176-56329635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
47, 42
               

               
Conread position:
               
331-873
               

               
Cow position:
               
chr18:40306768-40307310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
134, 122
               

               
Conread position:
               
331-873
               

               
Cow position:
               
chr18:41197586-41198128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 106
               

               
Conread position:
               
331-873
               

               
Cow position:
               
chr18:42837841-42837299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
280, 272
               

               
Conread position:
               
331-873
               

               
Cow position:
               
chr18:56329420-56328878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
133, 118
               

               
Conread position:
               
331-873
               

               
Cow position:
               
chr18:56329924-56329382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
551
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
147, 110
               

               
Conread position:
               
331-891
               

               
Cow position:
               
chr18:43093491-43092931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 110
               

               
Conread position:
               
331-891
               

               
Cow position:
               
chr18:43093575-43093015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
213, 194
               

               
Conread position:
               
331-894
               

               
Cow position:
               
chr18:42792319-42792882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
569
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
229, 236
               

               
Conread position:
               
331-894
               

               
Cow position:
               
chr18:53635613-53635050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
127, 118
               

               
Conread position:
               
331-895
               

               
Cow position:
               
chr18:50246172-50246736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
573
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
42, 34
               

               
Conread position:
               
331-898
               

               
Cow position:
               
chr18:33092927-33092366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
573
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
224, 190
               

               
Conread position:
               
331-899
               

               
Cow position:
               
chr18:52012431-52011864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
571
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
344, 21
               

               
Conread position:
               
332-581
               

               
Cow position:
               
chr18:44184202-44183953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
332-656
               

               
Cow position:
               
chr18:42984792-42984468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
128, 110
               

               
Conread position:
               
332-691
               

               
Cow position:
               
chr18:54993588-54993945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
326, 0
               

               
Conread position:
               
332-696
               

               
Cow position:
               
chr18:42837504-42837140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
211, 204
               

               
Conread position:
               
332-696
               

               
Cow position:
               
chr18:52447876-52448240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
129, 118
               

               
Conread position:
               
332-696
               

               
Cow position:
               
chr18:55018228-55018592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
44, 55
               

               
Conread position:
               
332-698
               

               
Cow position:
               
chr18:49032446-49032080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
39, 55
               

               
Conread position:
               
332-700
               

               
Cow position:
               
chr18:42744201-42743833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
44, 34
               

               
Conread position:
               
332-700
               

               
Cow position:
               
chr18:43119891-43119523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
128, 116
               

               
Conread position:
               
332-702
               

               
Cow position:
               
chr18:43022387-43022017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
128, 118
               

               
Conread position:
               
332-702
               

               
Cow position:
               
chr18:56494108-56494478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
332-705
               

               
Cow position:
               
chr18:56247468-56247102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
126, 6
               

               
Conread position:
               
332-707
               

               
Cow position:
               
chr18:51789125-51788750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
201, 213
               

               
Conread position:
               
332-735
               

               
Cow position:
               
chr18:55018396-55018800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
133, 138
               

               
Conread position:
               
332-741
               

               
Cow position:
               
chr18:53498323-53498729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
142, 0
               

               
Conread position:
               
332-749
               

               
Cow position:
               
chr18:43168140-43168555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
129, 118
               

               
Conread position:
               
332-761
               

               
Cow position:
               
chr18:53560274-53560703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
332-774
               

               
Cow position:
               
chr18:50281854-50282296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
204, 212
               

               
Conread position:
               
332-774
               

               
Cow position:
               
chr18:52447540-52447982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
126, 117
               

               
Conread position:
               
332-774
               

               
Cow position:
               
chr18:56494024-56494466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
125, 116
               

               
Conread position:
               
332-775
               

               
Cow position:
               
chr18:40324452-40324009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
311, 288
               

               
Conread position:
               
332-775
               

               
Cow position:
               
chr18:44184454-44184011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
128, 118
               

               
Conread position:
               
332-775
               

               
Cow position:
               
chr18:53509334-53509777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
309, 316
               

               
Conread position:
               
332-775
               

               
Cow position:
               
chr18:53525788-53526231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
332-775
               

               
Cow position:
               
chr18:53586483-53586040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
279, 270
               

               
Conread position:
               
332-780
               

               
Cow position:
               
chr18:44398175-44397727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
282, 275
               

               
Conread position:
               
332-780
               

               
Cow position:
               
chr18:54967131-54967579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 187
               

               
Conread position:
               
332-781
               

               
Cow position:
               
chr18:44398007-44397558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
128, 109
               

               
Conread position:
               
332-789
               

               
Cow position:
               
chr18:56128469-56128926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
147, 119
               

               
Conread position:
               
332-844
               

               
Cow position:
               
chr18:50251014-50251523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
202, 135
               

               
Conread position:
               
332-858
               

               
Cow position:
               
chr18:42675309-42674783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 104
               

               
Conread position:
               
332-858
               

               
Cow position:
               
chr18:42744369-42743843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
536
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
54, 32
               

               
Conread position:
               
332-858
               

               
Cow position:
               
chr18:44184706-44184180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
515, 520
               

               
Conread position:
               
332-858
               

               
Cow position:
               
chr18:44240021-44240547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
128, 116
               

               
Conread position:
               
332-858
               

               
Cow position:
               
chr18:54967716-54968240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
534
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
33, 45
               

               
Conread position:
               
332-858
               

               
Cow position:
               
chr18:54992832-54993358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
536
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
43, 27
               

               
Conread position:
               
332-859
               

               
Cow position:
               
chr18:55066930-55066403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
294, 272
               

               
Conread position:
               
332-862
               

               
Cow position:
               
chr18:52447708-52448237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
534
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
298, 288
               

               
Conread position:
               
332-864
               

               
Cow position:
               
chr18:42675057-42674526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 130
               

               
Conread position:
               
332-864
               

               
Cow position:
               
chr18:43093406-43092875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
539
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 109
               

               
Conread position:
               
332-864
               

               
Cow position:
               
chr18:43167888-43168420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
539
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 35
               

               
Conread position:
               
332-864
               

               
Cow position:
               
chr18:50083714-50084245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
536
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 54
               

               
Conread position:
               
332-864
               

               
Cow position:
               
chr18:50099575-50100106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
536
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
198, 209
               

               
Conread position:
               
332-864
               

               
Cow position:
               
chr18:53560106-53560638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
538
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
55, 33
               

               
Conread position:
               
332-864
               

               
Cow position:
               
chr18:53586651-53586119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
535
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 109
               

               
Conread position:
               
332-864
               

               
Cow position:
               
chr18:54979740-54980271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
113, 105
               

               
Conread position:
               
332-864
               

               
Cow position:
               
chr18:54980076-54980607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
131, 116
               

               
Conread position:
               
332-865
               

               
Cow position:
               
chr18:50295284-50295817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
45, 33
               

               
Conread position:
               
332-865
               

               
Cow position:
               
chr18:53635696-53635163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
539
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
148, 125
               

               
Conread position:
               
332-866
               

               
Cow position:
               
chr18:1418014-1418548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 108
               

               
Conread position:
               
332-866
               

               
Cow position:
               
chr18:33064758-33064224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
538
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
199, 190
               

               
Conread position:
               
332-866
               

               
Cow position:
               
chr18:42675225-42674691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
539
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
280, 272
               

               
Conread position:
               
332-868
               

               
Cow position:
               
chr18:33064590-33064054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
539
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
304, 271
               

               
Conread position:
               
332-868
               

               
Cow position:
               
chr18:50059107-50058571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
136, 120
               

               
Conread position:
               
332-868
               

               
Cow position:
               
chr18:54979656-54980192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 190
               

               
Conread position:
               
332-869
               

               
Cow position:
               
chr18:41949084-41948547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
128, 109
               

               
Conread position:
               
332-869
               

               
Cow position:
               
chr18:41949168-41948631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
542
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
120, 130
               

               
Conread position:
               
332-869
               

               
Cow position:
               
chr18:43022975-43022438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
128, 110
               

               
Conread position:
               
332-869
               

               
Cow position:
               
chr18:44239853-44240390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
541
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
7.00649e-43
               

               
Alignm gaps (pig, cow):
               
363, 388
               

               
Conread position:
               
332-870
               

               
Cow position:
               
chr18:44184874-44184336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
137, 116
               

               
Conread position:
               
332-870
               

               
Cow position:
               
chr18:50246257-50246795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
211, 201
               

               
Conread position:
               
332-871
               

               
Cow position:
               
chr18:43175260-43174721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 118
               

               
Conread position:
               
332-872
               

               
Cow position:
               
chr18:50083462-50084002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
44, 34
               

               
Conread position:
               
332-872
               

               
Cow position:
               
chr18:50848683-50849223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
128, 123
               

               
Conread position:
               
332-872
               

               
Cow position:
               
chr18:55067014-55066475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
309, 288
               

               
Conread position:
               
332-873
               

               
Cow position:
               
chr18:42744621-42744080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
279, 271
               

               
Conread position:
               
332-873
               

               
Cow position:
               
chr18:49032866-49032325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
126, 109
               

               
Conread position:
               
332-873
               

               
Cow position:
               
chr18:56329587-56329046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
131, 116
               

               
Conread position:
               
332-873
               

               
Cow position:
               
chr18:56493940-56494481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
50, 60
               

               
Conread position:
               
332-899
               

               
Cow position:
               
chr18:50099239-50099806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
574
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
219, 200
               

               
Conread position:
               
332-899
               

               
Cow position:
               
chr18:52447456-52448023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
572
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
42, 54
               

               
Conread position:
               
332-910
               

               
Cow position:
               
chr18:42790976-42791552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
583
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
136, 109
               

               
Conread position:
               
332-929
               

               
Cow position:
               
chr18:56316313-56316907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
212, 186
               

               
Conread position:
               
333-701
               

               
Cow position:
               
chr18:14454007-14453639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
45, 32
               

               
Conread position:
               
333-761
               

               
Cow position:
               
chr18:50295201-50295629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
41, 32
               

               
Conread position:
               
333-858
               

               
Cow position:
               
chr18:33064925-33064400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
299, 283
               

               
Conread position:
               
333-858
               

               
Cow position:
               
chr18:53587070-53586545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
278, 270
               

               
Conread position:
               
333-866
               

               
Cow position:
               
chr18:42960286-42959753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
538
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
29, 53
               

               
Conread position:
               
333-866
               

               
Cow position:
               
chr18:43175511-43174978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
538
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
117, 129
               

               
Conread position:
               
333-872
               

               
Cow position:
               
chr18:50848432-50848971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
45, 30
               

               
Conread position:
               
333-899
               

               
Cow position:
               
chr18:50049214-50048644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
41, 32
               

               
Conread position:
               
334-693
               

               
Cow position:
               
chr18:44253877-44253518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
118, 137
               

               
Conread position:
               
334-785
               

               
Cow position:
               
chr18:56128723-56129173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
120, 144
               

               
Conread position:
               
334-864
               

               
Cow position:
               
chr18:33065092-33064563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
537
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
8, 24
               

               
Conread position:
               
334-868
               

               
Cow position:
               
chr18:54993002-54993536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
113, 102
               

               
Conread position:
               
334-873
               

               
Cow position:
               
chr18:41949334-41948795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
126, 103
               

               
Conread position:
               
334-873
               

               
Cow position:
               
chr18:55008657-55009196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
133, 122
               

               
Conread position:
               
335-858
               

               
Cow position:
               
chr18:52012092-52011569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
276, 267
               

               
Conread position:
               
336-761
               

               
Cow position:
               
chr18:55067094-55066669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 105
               

               
Conread position:
               
336-843
               

               
Cow position:
               
chr18:54993340-54993847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
42, 35
               

               
Conread position:
               
336-858
               

               
Cow position:
               
chr18:53525708-53526230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
525
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
361, 383
               

               
Conread position:
               
336-858
               

               
Cow position:
               
chr18:55523408-55523930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
524
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
206, 186
               

               
Conread position:
               
336-875
               

               
Cow position:
               
chr18:53509254-53509793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
364, 381
               

               
Conread position:
               
336-899
               

               
Cow position:
               
chr18:55523744-55524307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
116, 105
               

               
Conread position:
               
337-761
               

               
Cow position:
               
chr18:50295373-50295797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
37, 28
               

               
Conread position:
               
337-843
               

               
Cow position:
               
chr18:40306690-40307196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
274, 266
               

               
Conread position:
               
337-873
               

               
Cow position:
               
chr18:40075124-40075660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
121, 113
               

               
Conread position:
               
338-661
               

               
Cow position:
               
chr18:44397833-44397510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
125, 103
               

               
Conread position:
               
338-695
               

               
Cow position:
               
chr18:50271815-50272171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
122, 109
               

               
Conread position:
               
338-705
               

               
Cow position:
               
chr18:51839207-51838840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
125, 112
               

               
Conread position:
               
338-873
               

               
Cow position:
               
chr18:49033364-49032829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
543
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
47, 25
               

               
Conread position:
               
338-899
               

               
Cow position:
               
chr18:50099497-50100058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 145
               

               
Conread position:
               
342-858
               

               
Cow position:
               
chr18:42985454-42984938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
129, 120
               

               
Conread position:
               
342-866
               

               
Cow position:
               
chr18:33093084-33092560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
44, 36
               

               
Conread position:
               
343-866
               

               
Cow position:
               
chr18:43167983-43168506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 98
               

               
Conread position:
               
344-696
               

               
Cow position:
               
chr18:52433594-52433946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
118, 106
               

               
Conread position:
               
344-706
               

               
Cow position:
               
chr18:42827512-42827874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
127, 106
               

               
Conread position:
               
344-737
               

               
Cow position:
               
chr18:51765302-51764909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
294, 277
               

               
Conread position:
               
344-748
               

               
Cow position:
               
chr18:51752143-51751739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
114, 106
               

               
Conread position:
               
344-768
               

               
Cow position:
               
chr18:42827428-42827852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
43, 19
               

               
Conread position:
               
344-858
               

               
Cow position:
               
chr18:43022711-43022197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
397, 376
               

               
Conread position:
               
344-858
               

               
Cow position:
               
chr18:53586975-53586461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
267, 258
               

               
Conread position:
               
344-864
               

               
Cow position:
               
chr18:43167564-43168083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
117, 108
               

               
Conread position:
               
344-866
               

               
Cow position:
               
chr18:50059263-50058741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
34, 21
               

               
Conread position:
               
344-866
               

               
Cow position:
               
chr18:56316073-56316595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
201, 190
               

               
Conread position:
               
344-868
               

               
Cow position:
               
chr18:50271485-50272009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
30, 21
               

               
Conread position:
               
344-870
               

               
Cow position:
               
chr18:50048863-50048337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
34, 22
               

               
Conread position:
               
344-870
               

               
Cow position:
               
chr18:51400556-51401082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
114, 105
               

               
Conread position:
               
344-872
               

               
Cow position:
               
chr18:43093727-43093202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
192, 53
               

               
Conread position:
               
344-872
               

               
Cow position:
               
chr18:44398415-44397887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
297, 301
               

               
Conread position:
               
344-873
               

               
Cow position:
               
chr18:52433510-52434039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
114, 105
               

               
Conread position:
               
344-874
               

               
Cow position:
               
chr18:50059599-50059069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
538
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
44, 27
               

               
Conread position:
               
344-899
               

               
Cow position:
               
chr18:50098999-50099554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
561
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
30, 19
               

               
Conread position:
               
344-899
               

               
Cow position:
               
chr18:50099755-50100310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
560
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
181, 201
               

               
Conread position:
               
344-899
               

               
Cow position:
               
chr18:52428077-52428632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
560
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
297, 301
               

               
Conread position:
               
345-781
               

               
Cow position:
               
chr18:54992677-54993113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
206, 177
               

               
Conread position:
               
345-866
               

               
Cow position:
               
chr18:50848276-50848797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
115, 103
               

               
Conread position:
               
345-868
               

               
Cow position:
               
chr18:54979417-54979940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
216, 192
               

               
Conread position:
               
345-872
               

               
Cow position:
               
chr18:1417859-1418386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
534
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
42, 29
               

               
Conread position:
               
345-872
               

               
Cow position:
               
chr18:42790905-42791432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
537
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
9, 41
               

               
Conread position:
               
346-700
               

               
Cow position:
               
chr18:51789615-51789261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
114, 104
               

               
Conread position:
               
346-702
               

               
Cow position:
               
chr18:51969617-51969964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
114, 106
               

               
Conread position:
               
346-750
               

               
Cow position:
               
chr18:51969367-51969769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
114, 104
               

               
Conread position:
               
346-768
               

               
Cow position:
               
chr18:52427911-52428333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
116, 104
               

               
Conread position:
               
346-858
               

               
Cow position:
               
chr18:42837910-42837398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
124, 104
               

               
Conread position:
               
346-864
               

               
Cow position:
               
chr18:54979502-54980020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
116, 103
               

               
Conread position:
               
346-899
               

               
Cow position:
               
chr18:50083392-50083945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
562
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
120, 90
               

               
Conread position:
               
346-899
               

               
Cow position:
               
chr18:52433260-52433813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
557
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
295, 299
               

               
Conread position:
               
347-704
               

               
Cow position:
               
chr18:51400307-51400664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
347-707
               

               
Cow position:
               
chr18:51812353-51811993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
189, 198
               

               
Conread position:
               
347-750
               

               
Cow position:
               
chr18:51765971-51765568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
113, 103
               

               
Conread position:
               
347-838
               

               
Cow position:
               
chr18:50022292-50021798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
113, 89
               

               
Conread position:
               
347-864
               

               
Cow position:
               
chr18:50271572-50272088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
294, 299
               

               
Conread position:
               
347-894
               

               
Cow position:
               
chr18:51765719-51765172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
113, 100
               

               
Conread position:
               
376-864
               

               
Cow position:
               
chr18:51812828-51812340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
50, 57
               

               
Conread position:
               
377-838
               

               
Cow position:
               
chr18:43120182-43119721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
234, 226
               

               
Conread position:
               
377-858
               

               
Cow position:
               
chr18:44239814-44240295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
82, 60
               

               
Conread position:
               
377-870
               

               
Cow position:
               
chr18:44184913-44184420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
93, 73
               

               
Conread position:
               
377-871
               

               
Cow position:
               
chr18:41949375-41948881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
83, 64
               

               
Conread position:
               
380-870
               

               
Cow position:
               
chr18:50059311-50058821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
80, 75
               

               
Conread position:
               
383-865
               

               
Cow position:
               
chr18:50022340-50021855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
147, 163
               

               
Conread position:
               
384-704
               

               
Cow position:
               
chr18:56248177-56247860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
76, 13
               

               
Conread position:
               
384-864
               

               
Cow position:
               
chr18:43175544-43175065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
76, 66
               

               
Conread position:
               
384-874
               

               
Cow position:
               
chr18:41197975-41198465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
82, 57
               

               
Conread position:
               
384-899
               

               
Cow position:
               
chr18:50245973-50246488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
146, 157
               

               
Conread position:
               
385-696
               

               
Cow position:
               
chr18:52428454-52428765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
256, 260
               

               
Conread position:
               
385-751
               

               
Cow position:
               
chr18:33092705-33092345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
227, 210
               

               
Conread position:
               
385-753
               

               
Cow position:
               
chr18:51766017-51765649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
75, 63
               

               
Conread position:
               
385-755
               

               
Cow position:
               
chr18:40086533-40086165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
226, 218
               

               
Conread position:
               
385-774
               

               
Cow position:
               
chr18:43023090-43022701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
66, 77
               

               
Conread position:
               
385-775
               

               
Cow position:
               
chr18:43120006-43119616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
83, 72
               

               
Conread position:
               
385-864
               

               
Cow position:
               
chr18:42675340-42674861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
147, 140
               

               
Conread position:
               
385-864
               

               
Cow position:
               
chr18:42837703-42837225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
391, 415
               

               
Conread position:
               
385-866
               

               
Cow position:
               
chr18:50083683-50084164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
252, 246
               

               
Conread position:
               
385-899
               

               
Cow position:
               
chr18:43167857-43168371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
75, 53
               

               
Conread position:
               
385-899
               

               
Cow position:
               
chr18:52432963-52433477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
256, 260
               

               
Conread position:
               
385-899
               

               
Cow position:
               
chr18:52447341-52447855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
76, 65
               

               
Conread position:
               
386-701
               

               
Cow position:
               
chr18:44253741-44253426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
263, 221
               

               
Conread position:
               
386-751
               

               
Cow position:
               
chr18:40324314-40323949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
77, 63
               

               
Conread position:
               
386-774
               

               
Cow position:
               
chr18:56434363-56434751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
76, 63
               

               
Conread position:
               
386-864
               

               
Cow position:
               
chr18:33064452-33063974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 155
               

               
Conread position:
               
386-867
               

               
Cow position:
               
chr18:42791954-42792435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
255, 261
               

               
Conread position:
               
386-873
               

               
Cow position:
               
chr18:1417984-1418471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
155, 134
               

               
Conread position:
               
386-883
               

               
Cow position:
               
chr18:49022628-49023125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
81, 56
               

               
Conread position:
               
387-865
               

               
Cow position:
               
chr18:42985577-42985099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
75, 63
               

               
Conread position:
               
390-784
               

               
Cow position:
               
chr18:49032472-49032078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
222, 212
               

               
Conread position:
               
391-755
               

               
Cow position:
               
chr18:43048741-43048377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
8e-34
               

               
Alignm gaps (pig, cow):
               
236, 214
               

               
Conread position:
               
392-864
               

               
Cow position:
               
chr18:33093118-33092646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
142, 162
               

               
Conread position:
               
393-873
               

               
Cow position:
               
chr18:56329778-56329298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
71, 56
               

               
Conread position:
               
394-873
               

               
Cow position:
               
chr18:42744727-42744248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
64, 69
               

               
Conread position:
               
395-875
               

               
Cow position:
               
chr18:53610392-53609912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
65, 46
               

               
Conread position:
               
396-872
               

               
Cow position:
               
chr18:42827397-42827872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
147, 6
               

               
Conread position:
               
398-859
               

               
Cow position:
               
chr18:53509232-53509693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
48, 55
               

               
Conread position:
               
398-864
               

               
Cow position:
               
chr18:53525686-53526152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
48, 55
               

               
Conread position:
               
398-864
               

               
Cow position:
               
chr18:55067116-55066650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
60, 43
               

               
Conread position:
               
399-866
               

               
Cow position:
               
chr18:33064943-33064476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
166, 137
               

               
Conread position:
               
399-873
               

               
Cow position:
               
chr18:56493839-56494313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
59, 50
               

               
Conread position:
               
409-866
               

               
Cow position:
               
chr18:56128041-56128499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
7, 199
               

               
Conread position:
               
410-869
               

               
Cow position:
               
chr18:40306175-40306634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
151, 124
               

               
Conread position:
               
410-873
               

               
Cow position:
               
chr18:56330181-56329718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
137, 124
               

               
Conread position:
               
413-835
               

               
Cow position:
               
chr18:55442275-55442698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
191, 199
               

               
Conread position:
               
413-864
               

               
Cow position:
               
chr18:41197500-41197950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
118, 106
               

               
Conread position:
               
414-870
               

               
Cow position:
               
chr18:42837926-42837470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
46, 36
               

               
Conread position:
               
421-872
               

               
Cow position:
               
chr18:51400297-51400748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
39, 29
               

               
Conread position:
               
431-862
               

               
Cow position:
               
chr18:40324857-40324427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
24, 16
               

               
Conread position:
               
431-873
               

               
Cow position:
               
chr18:51752224-51751782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
29, 19
               

               
Conread position:
               
432-899
               

               
Cow position:
               
chr18:50098919-50099386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
109, 90
               

               
Conread position:
               
437-872
               

               
Cow position:
               
chr18:50848118-50848551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
115, 13
               

               
Conread position:
               
453-865
               

               
Cow position:
               
chr18:50031018-50030606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
7, 51
               

               
Conread position:
               
460-780
               

               
Cow position:
               
chr18:44184914-44184594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
87, 78
               

               
Conread position:
               
460-871
               

               
Cow position:
               
chr18:42985588-42985177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
173, 187
               

               
Conread position:
               
461-873
               

               
Cow position:
               
chr18:56247756-56247352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
183, 172
               

               
Conread position:
               
461-882
               

               
Cow position:
               
chr18:50281731-50282152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
85, 64
               

               
Conread position:
               
466-864
               

               
Cow position:
               
chr18:14454042-14453645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
78, 60
               

               
Conread position:
               
468-871
               

               
Cow position:
               
chr18:43023091-43022688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
160, 139
               

               
Conread position:
               
469-866
               

               
Cow position:
               
chr18:42675340-42674943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
159, 138
               

               
Conread position:
               
470-864
               

               
Cow position:
               
chr18:51789575-51789181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
66, 75
               

               
Conread position:
               
470-872
               

               
Cow position:
               
chr18:50271527-50271929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
171, 177
               

               
Conread position:
               
470-897
               

               
Cow position:
               
chr18:50281656-50282083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
11, 23
               

               
Conread position:
               
482-702
               

               
Cow position:
               
chr18:51969335-51969555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
135, 146
               

               
Conread position:
               
482-869
               

               
Cow position:
               
chr18:14453294-14452907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
61, 39
               

               
Conread position:
               
483-859
               

               
Cow position:
               
chr18:44398444-44398068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
129, 124
               

               
Conread position:
               
488-867
               

               
Cow position:
               
chr18:53509238-53509617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
55, 34
               

               
Conread position:
               
490-870
               

               
Cow position:
               
chr18:42827406-42827786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
65, 31
               

               
Conread position:
               
490-872
               

               
Cow position:
               
chr18:50271463-50271845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
51, 32
               

               
Conread position:
               
490-873
               

               
Cow position:
               
chr18:56330185-56329802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
56, 51
               

               
Conread position:
               
497-872
               

               
Cow position:
               
chr18:41197500-41197875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
115, 106
               

               
Conread position:
               
553-865
               

               
Cow position:
               
chr18:1417983-1418295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
88, 93
               

               
Conread position:
               
607-872
               

               
Cow position:
               
chr18:50295223-50295488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
104, 112
               

               
Conread position:
               
649-873
               

               
Cow position:
               
chr18:14453295-14453071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
155, 121
               
Show alignments to all cow chromosomes.