Cow genome map
| Conread name: | Ss1.1-Mixn-0006b24.5 |
| Conread position: | 310-755 |
| Cow position: | chr22:11666435-11666880 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 272 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 17, 9 |
| Conread position: | 310-866 |
| Cow position: | chr22:11701089-11701645 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 329 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 17, 9 |
| Conread position: | 321-695 |
| Cow position: | chr22:12458189-12457815 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 229 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 40, 66 |
| Conread position: | 321-698 |
| Cow position: | chr22:11666530-11666907 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 247 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 45, 65 |
| Conread position: | 321-755 |
| Cow position: | chr22:11701184-11701618 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 275 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 150, 132 |
| Conread position: | 321-899 |
| Cow position: | chr22:12431320-12430743 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 13 |
| Conread position: | 322-874 |
| Cow position: | chr22:12458610-12458055 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 340 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 11, 234 |
| Conread position: | 324-615 |
| Cow position: | chr22:12499628-12499919 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 194 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 47, 53 |
| Conread position: | 324-747 |
| Cow position: | chr22:12399170-12398749 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 266 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 221, 212 |
| Conread position: | 324-866 |
| Cow position: | chr22:14429732-14430274 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 324 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 240, 198 |
| Conread position: | 328-899 |
| Cow position: | chr22:12431398-12430827 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 113 |
| Conread position: | 330-865 |
| Cow position: | chr22:12385576-12385039 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 329 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 141, 106 |
| Conread position: | 330-866 |
| Cow position: | chr22:14467983-14468519 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 331 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 141, 127 |
| Conread position: | 330-899 |
| Cow position: | chr22:12431564-12430995 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 133 |
| Conread position: | 331-699 |
| Cow position: | chr22:14468152-14468520 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 235 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 133, 110 |
| Conread position: | 331-702 |
| Cow position: | chr22:12385321-12384950 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 240 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 140, 126 |
| Conread position: | 331-704 |
| Cow position: | chr22:12430975-12430602 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 246 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 26, 56 |
| Conread position: | 331-736 |
| Cow position: | chr22:11701278-11701683 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 254 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 140, 110 |
| Conread position: | 331-755 |
| Cow position: | chr22:46654358-46654782 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 253 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 141, 119 |
| Conread position: | 331-774 |
| Cow position: | chr22:14430159-14430602 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 267 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 120, 133 |
| Conread position: | 331-835 |
| Cow position: | chr22:11640951-11641455 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 319 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 48, 56 |
| Conread position: | 331-864 |
| Cow position: | chr22:12458515-12457983 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 316 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 310, 314 |
| Conread position: | 331-866 |
| Cow position: | chr22:11640699-11641234 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 321 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 140, 110 |
| Conread position: | 331-866 |
| Cow position: | chr22:11640867-11641402 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 206 |
| Conread position: | 331-866 |
| Cow position: | chr22:12419018-12418483 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 324 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 262, 268 |
| Conread position: | 331-866 |
| Cow position: | chr22:12431647-12431112 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 328 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 281, 276 |
| Conread position: | 331-866 |
| Cow position: | chr22:46654190-46654725 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 324 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 131, 117 |
| Conread position: | 331-873 |
| Cow position: | chr22:12399331-12398789 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 330 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 131, 110 |
| Conread position: | 331-899 |
| Cow position: | chr22:12431479-12430911 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 348 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 139, 110 |
| Conread position: | 331-909 |
| Cow position: | chr22:12431983-12431407 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 345 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 139, 110 |
| Conread position: | 332-584 |
| Cow position: | chr22:12499720-12499972 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 332-668 |
| Cow position: | chr22:12475623-12475287 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 217 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 332-774 |
| Cow position: | chr22:12385404-12384962 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 268 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 130, 118 |
| Conread position: | 332-858 |
| Cow position: | chr22:12431898-12431372 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 322 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 129, 123 |
| Conread position: | 332-864 |
| Cow position: | chr22:12432066-12431534 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 329 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 128, 110 |
| Conread position: | 332-865 |
| Cow position: | chr22:12399414-12398881 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 334 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 131, 118 |
| Conread position: | 332-866 |
| Cow position: | chr22:14429656-14430190 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 324 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 138, 115 |
| Conread position: | 332-868 |
| Cow position: | chr22:12432318-12431782 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 335 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 114, 130 |
| Conread position: | 332-871 |
| Cow position: | chr22:12499384-12499923 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 332 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 309, 314 |
| Conread position: | 332-872 |
| Cow position: | chr22:12476295-12475755 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 335 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 199, 187 |
| Conread position: | 332-872 |
| Cow position: | chr22:12498964-12499504 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 334 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 199, 186 |
| Conread position: | 332-873 |
| Cow position: | chr22:12399750-12399209 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 316 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 204, 213 |
| Conread position: | 332-873 |
| Cow position: | chr22:12432234-12431693 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 339 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 31, 45 |
| Conread position: | 332-873 |
| Cow position: | chr22:12476211-12475670 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 333 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 54, 38 |
| Conread position: | 332-894 |
| Cow position: | chr22:12431226-12430664 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 125 |
| Conread position: | 332-898 |
| Cow position: | chr22:12499048-12499614 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 348 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 54, 38 |
| Conread position: | 332-899 |
| Cow position: | chr22:12476043-12475476 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 343 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 125, 109 |
| Conread position: | 333-754 |
| Cow position: | chr22:12432401-12431980 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 251 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 126, 104 |
| Conread position: | 334-871 |
| Cow position: | chr22:12475873-12475336 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 333 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 293, 259 |
| Conread position: | 336-898 |
| Cow position: | chr22:12499304-12499866 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 342 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 276, 271 |
| Conread position: | 337-872 |
| Cow position: | chr22:12458425-12457890 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 329 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 129, 113 |
| Conread position: | 338-870 |
| Cow position: | chr22:12399492-12398960 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 104 |
| Conread position: | 338-898 |
| Cow position: | chr22:11640790-11641350 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 353 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 49, 43 |
| Conread position: | 342-873 |
| Cow position: | chr22:12399824-12399293 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 326 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 203, 191 |
| Conread position: | 344-775 |
| Cow position: | chr22:12458250-12457819 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 273 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 191, 177 |
| Conread position: | 344-872 |
| Cow position: | chr22:12431130-12430602 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 201 |
| Conread position: | 344-873 |
| Cow position: | chr22:12385478-12384947 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 317 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 18, 43 |
| Conread position: | 347-701 |
| Cow position: | chr22:46654458-46654812 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 214 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 112, 90 |
| Conread position: | 347-899 |
| Cow position: | chr22:46654122-46654674 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 338 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 131, 126 |
| Conread position: | 349-870 |
| Cow position: | chr22:46653956-46654477 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 306 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 211, 218 |
| Conread position: | 366-860 |
| Cow position: | chr22:12458648-12458154 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 40 |
| Conread position: | 373-873 |
| Cow position: | chr22:46654064-46654564 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 315 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 91, 77 |
| Conread position: | 385-696 |
| Cow position: | chr22:14467954-14468265 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 166, 137 |
| Conread position: | 385-873 |
| Cow position: | chr22:12498933-12499421 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 302 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 242, 217 |
| Conread position: | 385-875 |
| Cow position: | chr22:12385689-12385197 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 295 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 85, 65 |
| Conread position: | 386-864 |
| Cow position: | chr22:12431760-12431283 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 287 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 416, 404 |
| Conread position: | 386-872 |
| Cow position: | chr22:12385604-12385116 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 317 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 75, 57 |
| Conread position: | 386-872 |
| Cow position: | chr22:12432432-12431946 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 298 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 72, 64 |
| Conread position: | 386-873 |
| Cow position: | chr22:12476325-12475838 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 293 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 228, 221 |
| Conread position: | 387-866 |
| Cow position: | chr22:12419315-12418819 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 283 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 70, 62 |
| Conread position: | 431-872 |
| Cow position: | chr22:11701126-11701567 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 266 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 113, 94 |
| Conread position: | 459-906 |
| Cow position: | chr22:12432443-12431996 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 266 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 182, 187 |
| Conread position: | 463-704 |
| Cow position: | chr22:12419323-12419082 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 164, 131 |
| Conread position: | 478-784 |
| Cow position: | chr22:14430138-14430444 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 63, 77 |
| Conread position: | 640-873 |
| Cow position: | chr22:12419313-12419081 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 121, 10 |
Show alignments to all cow chromosomes.