Cow genome map
| Conread name: | Ss1.1-Mixn-0006b24.5 |
| Conread position: | 276-693 |
| Cow position: | chr25:326458-326867 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 259 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 352, 17 |
| Conread position: | 317-855 |
| Cow position: | chr25:33157479-33156941 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 335 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 141, 132 |
| Conread position: | 318-859 |
| Cow position: | chr25:36800542-36801083 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 317 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 147, 119 |
| Conread position: | 320-873 |
| Cow position: | chr25:326661-327221 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 334 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 5, 124 |
| Conread position: | 321-698 |
| Cow position: | chr25:414775-414407 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 233 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 367, 11 |
| Conread position: | 324-704 |
| Cow position: | chr25:346449-346828 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 149, 155 |
| Conread position: | 324-873 |
| Cow position: | chr25:34769871-34769322 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 344 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 46, 53 |
| Conread position: | 331-590 |
| Cow position: | chr25:33127978-33128237 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 129, 106 |
| Conread position: | 331-592 |
| Cow position: | chr25:33157045-33156785 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 56, 51 |
| Conread position: | 331-615 |
| Cow position: | chr25:23420559-23420843 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 127, 118 |
| Conread position: | 331-700 |
| Cow position: | chr25:34769612-34769243 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 222 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 47, 43 |
| Conread position: | 331-738 |
| Cow position: | chr25:23420391-23420798 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 266 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 140, 110 |
| Conread position: | 331-738 |
| Cow position: | chr25:33127810-33128217 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 265 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 212, 205 |
| Conread position: | 331-740 |
| Cow position: | chr25:34714126-34714533 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 252 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 130, 108 |
| Conread position: | 331-768 |
| Cow position: | chr25:34447366-34447796 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 272 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 137, 111 |
| Conread position: | 331-775 |
| Cow position: | chr25:34447114-34447558 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 274 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 130, 108 |
| Conread position: | 331-784 |
| Cow position: | chr25:33299327-33299780 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 276 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 129, 119 |
| Conread position: | 331-865 |
| Cow position: | chr25:33299243-33299777 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 324 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 42, 46 |
| Conread position: | 331-865 |
| Cow position: | chr25:36800891-36801413 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 328 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 130, 124 |
| Conread position: | 331-866 |
| Cow position: | chr25:34769780-34769245 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 324 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 132, 124 |
| Conread position: | 331-866 |
| Cow position: | chr25:34770032-34769497 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 110 |
| Conread position: | 331-869 |
| Cow position: | chr25:33298571-33299109 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 336 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 213, 195 |
| Conread position: | 331-869 |
| Cow position: | chr25:36800639-36801177 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 320 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 54, 34 |
| Conread position: | 331-870 |
| Cow position: | chr25:33298907-33299446 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 330 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 56, 32 |
| Conread position: | 331-872 |
| Cow position: | chr25:33298823-33299364 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 324 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 132, 119 |
| Conread position: | 331-899 |
| Cow position: | chr25:33157381-33156813 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 350 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 311, 318 |
| Conread position: | 332-829 |
| Cow position: | chr25:33144942-33145436 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 304 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 82, 70 |
| Conread position: | 332-858 |
| Cow position: | chr25:36800808-36801334 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 311 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 128, 118 |
| Conread position: | 332-864 |
| Cow position: | chr25:34713875-34714407 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 313 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 204, 213 |
| Conread position: | 332-865 |
| Cow position: | chr25:33298656-33299189 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 328 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 128, 110 |
| Conread position: | 335-865 |
| Cow position: | chr25:33306286-33305760 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 319 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 195, 119 |
| Conread position: | 336-858 |
| Cow position: | chr25:34447035-34447557 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 316 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 135, 101 |
| Conread position: | 338-702 |
| Cow position: | chr25:23420482-23420846 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 225 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 125, 112 |
| Conread position: | 344-692 |
| Cow position: | chr25:33157116-33156767 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 224 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 114, 105 |
| Conread position: | 344-836 |
| Cow position: | chr25:33127739-33128231 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 304 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 297, 301 |
| Conread position: | 344-865 |
| Cow position: | chr25:33144870-33145388 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 314 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 114, 97 |
| Conread position: | 344-873 |
| Cow position: | chr25:23420320-23420849 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 329 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 211, 194 |
| Conread position: | 347-700 |
| Cow position: | chr25:33145038-33145391 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 229 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 40, 34 |
| Conread position: | 347-781 |
| Cow position: | chr25:22235853-22236287 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 273 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 160, 156 |
| Conread position: | 384-789 |
| Cow position: | chr25:36801520-36801925 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 252 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 86, 66 |
| Conread position: | 385-873 |
| Cow position: | chr25:34770146-34769658 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 296 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 162, 136 |
| Conread position: | 386-873 |
| Cow position: | chr25:33157494-33157007 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 291 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 85, 64 |
| Conread position: | 390-704 |
| Cow position: | chr25:22235980-22236294 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 68, 59 |
| Conread position: | 390-836 |
| Cow position: | chr25:33305417-33304977 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 274 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 70, 13 |
| Conread position: | 391-873 |
| Cow position: | chr25:33127703-33128184 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 299 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 17, 9 |
| Conread position: | 400-696 |
| Cow position: | chr25:34732615-34732319 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 57, 50 |
| Conread position: | 408-781 |
| Cow position: | chr25:346449-346822 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 221 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 409-873 |
| Cow position: | chr25:22235830-22236295 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 271 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 10, 143 |
| Conread position: | 410-705 |
| Cow position: | chr25:366728-367023 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 133, 123 |
| Conread position: | 410-865 |
| Cow position: | chr25:33298566-33299021 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 272 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 218, 210 |
| Conread position: | 430-872 |
| Cow position: | chr25:34446961-34447403 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 274 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 30, 20 |
| Conread position: | 482-862 |
| Cow position: | chr25:33298470-33298849 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 97, 89 |
Show alignments to all cow chromosomes.