Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM10012F06.5 |
| Conread position: | 93-385 |
| Cow position: | chr12:21500171-21500452 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 204 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 40, 16 |
| Conread position: | 95-287 |
| Cow position: | chr12:21254591-21254399 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 143 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 121, 22 |
| Conread position: | 95-288 |
| Cow position: | chr12:2864-3056 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 163 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 22 |
| Conread position: | 95-293 |
| Cow position: | chr12:1402556-1402752 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 47, 22 |
| Conread position: | 95-293 |
| Cow position: | chr12:3360969-3361168 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 157 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 121, 22 |
| Conread position: | 95-293 |
| Cow position: | chr12:27932880-27932683 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 121, 22 |
| Conread position: | 95-293 |
| Cow position: | chr12:32653609-32653808 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 157 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 121, 22 |
| Conread position: | 95-293 |
| Cow position: | chr12:43031318-43031121 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 121, 22 |
| Conread position: | 95-294 |
| Cow position: | chr12:2282611-2282809 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 161 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 22 |
| Conread position: | 95-294 |
| Cow position: | chr12:5861219-5861416 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 166 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 22 |
| Conread position: | 95-294 |
| Cow position: | chr12:6406583-6406388 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 121, 10 |
| Conread position: | 95-294 |
| Cow position: | chr12:8678057-8677858 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 103, 22 |
| Conread position: | 95-294 |
| Cow position: | chr12:14662568-14662370 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 121, 22 |
| Conread position: | 95-294 |
| Cow position: | chr12:42859762-42859564 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 121, 22 |
| Conread position: | 95-323 |
| Cow position: | chr12:28765954-28765727 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 172 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 121, 22 |
| Conread position: | 95-324 |
| Cow position: | chr12:21198023-21198256 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 40, 10 |
| Conread position: | 95-332 |
| Cow position: | chr12:8311246-8311488 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 22 |
| Conread position: | 95-332 |
| Cow position: | chr12:21941830-21942070 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 121, 22 |
| Conread position: | 96-280 |
| Cow position: | chr12:21426760-21426943 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 120, 21 |
| Conread position: | 97-293 |
| Cow position: | chr12:33986229-33986424 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 119, 12 |
| Conread position: | 97-294 |
| Cow position: | chr12:22332692-22332887 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 119, 20 |
| Conread position: | 112-281 |
| Cow position: | chr12:20998052-20997883 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 112-293 |
| Cow position: | chr12:251976-251796 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 104, 27 |
| Conread position: | 112-293 |
| Cow position: | chr12:22205667-22205486 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 104, 130 |
| Conread position: | 112-293 |
| Cow position: | chr12:25100981-25100799 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 112-294 |
| Cow position: | chr12:11098322-11098505 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 112-294 |
| Cow position: | chr12:45261703-45261886 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 154 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 112-371 |
| Cow position: | chr12:23240084-23240348 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 104, 79 |
| Conread position: | 113-294 |
| Cow position: | chr12:21902020-21902202 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 151 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 103, 62 |
| Conread position: | 113-317 |
| Cow position: | chr12:2838773-2838575 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 163 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 103, 86 |
| Conread position: | 114-293 |
| Cow position: | chr12:37558637-37558820 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 150 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 115-294 |
| Cow position: | chr12:26946909-26946727 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 81, 123 |
| Conread position: | 116-547 |
| Cow position: | chr12:15951180-15950759 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 138 |
| Conread position: | 130-357 |
| Cow position: | chr12:18501132-18501351 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 8, 47 |
| Conread position: | 176-294 |
| Cow position: | chr12:31544922-31545041 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 101 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 185-293 |
| Cow position: | chr12:4157530-4157639 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 89 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 208-361 |
| Cow position: | chr12:48405430-48405577 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 383-574 |
| Cow position: | chr12:48405679-48405862 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 436-724 |
| Cow position: | chr12:348475-348763 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 203 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 64, 9 |
| Conread position: | 462-727 |
| Cow position: | chr12:21500560-21500820 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 192, 51 |
| Conread position: | 469-704 |
| Cow position: | chr12:1138216-1138449 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 169 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 20, 98 |
| Conread position: | 486-723 |
| Cow position: | chr12:1869403-1869647 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 588-727 |
| Cow position: | chr12:44005173-44005034 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 626-732 |
| Cow position: | chr12:11098503-11098607 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 90 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 632-727 |
| Cow position: | chr12:14662369-14662273 (view UCSC Genome Browser custom track) |
| Alignm length: | 97 |
| Alignm identity: | 83 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 632-727 |
| Cow position: | chr12:42859563-42859469 (view UCSC Genome Browser custom track) |
| Alignm length: | 97 |
| Alignm identity: | 83 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 13, 23 |
Show alignments to all cow chromosomes.