Cow genome map

Conread name: Ss1.1-Ova1-OVRM10012F06.5

Conread position: 92-293
Cow position: chr13:31734240-31734042 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 155
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 124, 30

Conread position: 95-213
Cow position: chr13:30237962-30238078 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 94
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 10, 0

Conread position: 95-264
Cow position: chr13:47230143-47229975 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 139
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 121, 10

Conread position: 95-269
Cow position: chr13:6668279-6668106 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 135
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 121, 22

Conread position: 95-273
Cow position: chr13:2908606-2908428 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 153
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 22

Conread position: 95-280
Cow position: chr13:1593311-1593127 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 146
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 121, 22

Conread position: 95-280
Cow position: chr13:9044345-9044528 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 147
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 121, 21

Conread position: 95-280
Cow position: chr13:32986213-32986029 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 150
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 34, 22

Conread position: 95-288
Cow position: chr13:31832444-31832633 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 158
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 121, 22

Conread position: 95-288
Cow position: chr13:56730441-56730251 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 159
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 121, 22

Conread position: 95-293
Cow position: chr13:4483641-4483835 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 148
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 121, 18

Conread position: 95-293
Cow position: chr13:13324593-13324792 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 160
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 121, 22

Conread position: 95-293
Cow position: chr13:17308319-17308518 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 156
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 121, 13

Conread position: 95-293
Cow position: chr13:21840350-21840151 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 159
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 119, 22

Conread position: 95-293
Cow position: chr13:35030400-35030592 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 150
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 34, 22

Conread position: 95-293
Cow position: chr13:60466181-60466380 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 159
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 121, 14

Conread position: 95-293
Cow position: chr13:62327740-62327543 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 169
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 22

Conread position: 95-294
Cow position: chr13:15924540-15924342 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 156
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 121, 22

Conread position: 95-294
Cow position: chr13:30657130-30656935 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 162
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 95-294
Cow position: chr13:33824887-33824693 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 162
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 121, 22

Conread position: 95-294
Cow position: chr13:35757085-35757283 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 155
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 121, 22

Conread position: 95-295
Cow position: chr13:15520671-15520472 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 155
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 121, 22

Conread position: 95-316
Cow position: chr13:34911534-34911313 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 15

Conread position: 95-324
Cow position: chr13:34186841-34186615 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 171
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 215, 22

Conread position: 95-332
Cow position: chr13:34142815-34142575 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 22

Conread position: 95-339
Cow position: chr13:4178807-4178561 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 180
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 122, 14

Conread position: 95-354
Cow position: chr13:34936991-34937248 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 22

Conread position: 96-293
Cow position: chr13:2388973-2388775 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 161
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 120, 21

Conread position: 96-293
Cow position: chr13:34325829-34325634 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 159
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 120, 21

Conread position: 96-294
Cow position: chr13:34693008-34693207 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 165
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 21

Conread position: 96-588
Cow position: chr13:54284417-54284904 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 23

Conread position: 97-293
Cow position: chr13:32737976-32737781 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 147
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 124, 12

Conread position: 97-316
Cow position: chr13:4872923-4873143 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 174
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 119, 12

Conread position: 101-319
Cow position: chr13:46732376-46732163 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 161
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 115, 15

Conread position: 112-243
Cow position: chr13:23003657-23003527 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 104
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 109, 0

Conread position: 112-293
Cow position: chr13:32544918-32545100 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 142
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 104, 0

Conread position: 112-294
Cow position: chr13:3277013-3277196 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 157
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 0

Conread position: 112-294
Cow position: chr13:4940947-4941130 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 142
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 104, 0

Conread position: 112-294
Cow position: chr13:31612476-31612294 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 142
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 55, 90

Conread position: 112-294
Cow position: chr13:34042510-34042327 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 146
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 104, 169

Conread position: 112-727
Cow position: chr13:20542514-20541898 (view UCSC Genome Browser custom track)
Alignm length: 628
Alignm identity: 492
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 28

Conread position: 114-293
Cow position: chr13:3058250-3058067 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 147
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 69, 0

Conread position: 114-293
Cow position: chr13:49973545-49973727 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 149
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 102, 0

Conread position: 114-293
Cow position: chr13:50109323-50109505 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 148
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 102, 0

Conread position: 117-371
Cow position: chr13:34767422-34767181 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 186
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 99, 117

Conread position: 119-294
Cow position: chr13:34868606-34868784 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 145
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 22, 92

Conread position: 121-371
Cow position: chr13:34111163-34111401 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 184
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 192, 69

Conread position: 122-333
Cow position: chr13:3567663-3567878 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 172
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 94, 200

Conread position: 128-280
Cow position: chr13:676751-676904 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 127
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 88, 0

Conread position: 129-279
Cow position: chr13:3654449-3654299 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 121
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 87, 35

Conread position: 150-294
Cow position: chr13:22765921-22766065 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 110
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 66, 23

Conread position: 160-294
Cow position: chr13:11799855-11799719 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 107
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 56, 0

Conread position: 160-696
Cow position: chr13:15451649-15451132 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 114

Conread position: 163-294
Cow position: chr13:33927675-33927545 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 109
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 55, 12

Conread position: 252-732
Cow position: chr13:26843793-26844235 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 237, 38

Conread position: 376-689
Cow position: chr13:34111482-34111806 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 218
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 13, 192

Conread position: 383-580
Cow position: chr13:11064605-11064409 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 148
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 177, 124

Conread position: 383-726
Cow position: chr13:34767069-34766734 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 50

Conread position: 390-732
Cow position: chr13:43983277-43982938 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 118

Conread position: 442-718
Cow position: chr13:34937348-34937617 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 21

Conread position: 443-717
Cow position: chr13:11763961-11763688 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 183
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 178, 57

Conread position: 449-732
Cow position: chr13:60700987-60700703 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 186
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 165, 34

Conread position: 450-719
Cow position: chr13:29202501-29202229 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 181
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 55, 48

Conread position: 474-709
Cow position: chr13:34186618-34186394 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 165
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 34, 0

Conread position: 497-719
Cow position: chr13:48357478-48357695 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 176
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 17, 72

Conread position: 497-726
Cow position: chr13:46731809-46731585 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 165
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 172, 18

Conread position: 571-732
Cow position: chr13:11064185-11064024 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 124
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 626-727
Cow position: chr13:22766063-22766163 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 85
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 8, 0

Conread position: 626-732
Cow position: chr13:15924344-15924240 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 88
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 15, 0

Conread position: 626-732
Cow position: chr13:23003269-23003165 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 88
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 8, 0

Conread position: 626-732
Cow position: chr13:35757281-35757385 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 88
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 38, 0

Conread position: 632-727
Cow position: chr13:30303319-30303415 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 82
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 5, 0

Conread position: 632-732
Cow position: chr13:30238289-30238389 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 88
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 632-732
Cow position: chr13:34042326-34042225 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 85
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 13, 0

Show alignments to all cow chromosomes.