Cow genome map

Conread name: Ss1.1-Ova1-OVRM10012F06.5

Conread position: 92-293
Cow position: chr16:25341336-25341536 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 159
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 124, 25

Conread position: 92-371
Cow position: chr16:44966543-44966806 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 195
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 25, 0

Conread position: 94-332
Cow position: chr16:30047866-30048103 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 174
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 122, 11

Conread position: 94-410
Cow position: chr16:49257210-49256896 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 23

Conread position: 95-262
Cow position: chr16:10437617-10437783 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 136
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 121, 21

Conread position: 95-273
Cow position: chr16:27734429-27734251 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 143
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 47, 14

Conread position: 95-274
Cow position: chr16:9777457-9777637 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 144
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 47, 22

Conread position: 95-280
Cow position: chr16:2239359-2239182 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 146
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 47, 22

Conread position: 95-280
Cow position: chr16:25440992-25441182 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 146
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 67, 10

Conread position: 95-280
Cow position: chr16:25458097-25457907 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 146
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 75, 10

Conread position: 95-281
Cow position: chr16:56551500-56551679 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 146
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 121, 22

Conread position: 95-287
Cow position: chr16:36282775-36282963 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 162
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 19, 45

Conread position: 95-288
Cow position: chr16:11052536-11052726 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 158
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 123, 22

Conread position: 95-288
Cow position: chr16:51685811-51686001 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 145
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 118, 22

Conread position: 95-292
Cow position: chr16:39821006-39821201 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 168
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 22

Conread position: 95-293
Cow position: chr16:23253133-23252936 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 158
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 121, 22

Conread position: 95-293
Cow position: chr16:28170988-28170790 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 156
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 121, 22

Conread position: 95-294
Cow position: chr16:407660-407459 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 153
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 47, 22

Conread position: 95-294
Cow position: chr16:1568080-1567882 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 160
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 121, 22

Conread position: 95-294
Cow position: chr16:2411595-2411397 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 158
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 121, 22

Conread position: 95-294
Cow position: chr16:2483769-2483570 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 153
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 41, 22

Conread position: 95-294
Cow position: chr16:6549150-6548952 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 161
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 22

Conread position: 95-294
Cow position: chr16:7905993-7906191 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 167
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 21

Conread position: 95-294
Cow position: chr16:8816730-8816532 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 156
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 120, 22

Conread position: 95-294
Cow position: chr16:10204056-10203858 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 160
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 121, 14

Conread position: 95-294
Cow position: chr16:14666455-14666257 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 161
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 121, 22

Conread position: 95-294
Cow position: chr16:19713512-19713317 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 167
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 16

Conread position: 95-294
Cow position: chr16:23982685-23982882 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 159
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 121, 21

Conread position: 95-294
Cow position: chr16:25084995-25085193 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 159
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 119, 22

Conread position: 95-294
Cow position: chr16:29046396-29046594 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 154
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 121, 22

Conread position: 95-301
Cow position: chr16:836403-836608 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 162
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 119, 22

Conread position: 95-316
Cow position: chr16:31592530-31592311 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 163
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 71, 22

Conread position: 95-371
Cow position: chr16:31375906-31375633 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 22

Conread position: 95-371
Cow position: chr16:52815113-52814842 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 22

Conread position: 95-727
Cow position: chr16:42740048-42739428 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 501
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 10

Conread position: 95-727
Cow position: chr16:49235776-49235164 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 16

Conread position: 96-227
Cow position: chr16:36232235-36232110 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 108
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 120, 16

Conread position: 96-274
Cow position: chr16:15566125-15566296 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 143
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 120, 21

Conread position: 96-294
Cow position: chr16:20254936-20254739 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 168
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 16

Conread position: 96-342
Cow position: chr16:34529696-34529943 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 185
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 120, 21

Conread position: 96-385
Cow position: chr16:335665-335947 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 21

Conread position: 96-730
Cow position: chr16:25156847-25156204 (view UCSC Genome Browser custom track)
Alignm length: 653
Alignm identity: 504
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 21

Conread position: 97-280
Cow position: chr16:25188019-25188200 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 148
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 119, 12

Conread position: 97-292
Cow position: chr16:32116-32308 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 155
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 119, 20

Conread position: 97-293
Cow position: chr16:53045730-53045925 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 149
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 119, 12

Conread position: 112-262
Cow position: chr16:40296789-40296638 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 124
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 104, 0

Conread position: 112-279
Cow position: chr16:36361973-36361805 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 146
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 23

Conread position: 112-280
Cow position: chr16:43897878-43897713 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 132
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 104, 20

Conread position: 112-294
Cow position: chr16:5483712-5483895 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 145
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 104, 161

Conread position: 112-294
Cow position: chr16:10808542-10808722 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 155
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 26

Conread position: 112-294
Cow position: chr16:12538535-12538353 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 143
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 104, 86

Conread position: 112-294
Cow position: chr16:15184192-15184375 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 139
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 100, 0

Conread position: 112-294
Cow position: chr16:26663137-26663321 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 148
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 30, 0

Conread position: 112-308
Cow position: chr16:23670238-23670048 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 143
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 102, 77

Conread position: 112-351
Cow position: chr16:18499960-18499724 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 0

Conread position: 112-385
Cow position: chr16:9929929-9930197 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 118

Conread position: 112-732
Cow position: chr16:29033106-29033721 (view UCSC Genome Browser custom track)
Alignm length: 628
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 27

Conread position: 114-276
Cow position: chr16:5918874-5919037 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 128
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 102, 0

Conread position: 114-293
Cow position: chr16:5661241-5661423 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 150
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 102, 0

Conread position: 114-293
Cow position: chr16:31832022-31832205 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 147
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 69, 0

Conread position: 114-294
Cow position: chr16:15492099-15492281 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 142
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 28, 0

Conread position: 120-251
Cow position: chr16:42050990-42050858 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 110
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 96, 0

Conread position: 120-294
Cow position: chr16:2727888-2727716 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 130
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 14, 0

Conread position: 120-389
Cow position: chr16:48626631-48626890 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 183
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 96, 86

Conread position: 121-303
Cow position: chr16:25153128-25153304 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 142
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 97, 34

Conread position: 129-280
Cow position: chr16:28471695-28471544 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 123
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 87, 145

Conread position: 139-330
Cow position: chr16:6943048-6943248 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 154
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 77, 0

Conread position: 140-385
Cow position: chr16:32935592-32935832 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 87

Conread position: 163-273
Cow position: chr16:4302888-4302777 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 93
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 54, 0

Conread position: 167-288
Cow position: chr16:29675935-29675813 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 100
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 49, 0

Conread position: 167-426
Cow position: chr16:16273390-16273132 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 64

Conread position: 177-727
Cow position: chr16:25257058-25257605 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 148

Conread position: 197-388
Cow position: chr16:5889392-5889582 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 145
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 19, 121

Conread position: 209-413
Cow position: chr16:23807454-23807660 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 162
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 7, 86

Conread position: 255-523
Cow position: chr16:42050592-42050345 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 204
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 30, 0

Conread position: 360-518
Cow position: chr16:49234836-49234679 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 119
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 148, 123

Conread position: 383-673
Cow position: chr16:18499381-18499094 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 108

Conread position: 383-732
Cow position: chr16:18764274-18763947 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 250
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 246, 34

Conread position: 387-591
Cow position: chr16:30304934-30305135 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 152
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 65, 0

Conread position: 397-713
Cow position: chr16:23807778-23808075 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 236
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 61, 79

Conread position: 415-709
Cow position: chr16:49256764-49256472 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 78

Conread position: 415-729
Cow position: chr16:5889890-5890188 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 61

Conread position: 416-727
Cow position: chr16:16272240-16271928 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 221
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 95, 76

Conread position: 479-727
Cow position: chr16:37457165-37456910 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 178
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 36, 80

Conread position: 483-719
Cow position: chr16:54177948-54177720 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 170
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 19, 27

Conread position: 610-727
Cow position: chr16:25085196-25085310 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 100
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 31, 0

Conread position: 624-732
Cow position: chr16:15184371-15184477 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 91
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 17, 0

Conread position: 626-727
Cow position: chr16:10437811-10437910 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 86
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 15, 0

Conread position: 626-732
Cow position: chr16:2411399-2411294 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 88
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 38, 0

Conread position: 626-732
Cow position: chr16:12538355-12538252 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 90
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 15, 0

Conread position: 626-732
Cow position: chr16:27734222-27734118 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 88
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 15, 0

Conread position: 626-732
Cow position: chr16:40296608-40296504 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 89
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 15, 0

Conread position: 626-732
Cow position: chr16:43897701-43897597 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 89
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 15, 0

Conread position: 632-727
Cow position: chr16:1567881-1567785 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 82
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 13, 0

Conread position: 632-732
Cow position: chr16:2727715-2727614 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 84
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 13, 0

Show alignments to all cow chromosomes.