Cow genome map

Conread name: Ss1.1-Ova1-OVRM10012F06.5

Conread position: 75-294
Cow position: chr17:14041114-14040896 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 156
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 6, 52

Conread position: 78-280
Cow position: chr17:228375-228172 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 162
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 24, 9

Conread position: 95-251
Cow position: chr17:249886-250046 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 129
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 46, 22

Conread position: 95-267
Cow position: chr17:16859604-16859445 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 128
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 22, 0

Conread position: 95-274
Cow position: chr17:6259797-6259974 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 143
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 67, 22

Conread position: 95-280
Cow position: chr17:15435743-15435927 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 148
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 121, 22

Conread position: 95-288
Cow position: chr17:18026805-18026613 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 161
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 22

Conread position: 95-292
Cow position: chr17:35592165-35592363 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 166
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 22

Conread position: 95-293
Cow position: chr17:2248632-2248435 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 159
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 121, 24

Conread position: 95-293
Cow position: chr17:2579577-2579764 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 146
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 121, 12

Conread position: 95-293
Cow position: chr17:8209058-8209257 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 160
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 121, 22

Conread position: 95-293
Cow position: chr17:14217072-14216875 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 155
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 46, 22

Conread position: 95-293
Cow position: chr17:15143415-15143216 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 157
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 119, 20

Conread position: 95-293
Cow position: chr17:15157011-15156813 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 157
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 119, 22

Conread position: 95-293
Cow position: chr17:23324502-23324303 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 156
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 121, 22

Conread position: 95-293
Cow position: chr17:25737615-25737812 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 152
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 121, 12

Conread position: 95-293
Cow position: chr17:40804768-40804966 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 154
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 121, 22

Conread position: 95-294
Cow position: chr17:1283753-1283555 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 168
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 13

Conread position: 95-294
Cow position: chr17:3642884-3642686 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 154
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 121, 22

Conread position: 95-294
Cow position: chr17:11087772-11087574 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 155
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 119, 22

Conread position: 95-294
Cow position: chr17:15850348-15850547 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 157
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 119, 19

Conread position: 95-294
Cow position: chr17:18185581-18185385 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 158
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 51, 22

Conread position: 95-294
Cow position: chr17:19269414-19269216 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 152
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 121, 22

Conread position: 95-294
Cow position: chr17:22132182-22132378 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 161
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 121, 22

Conread position: 95-294
Cow position: chr17:23857082-23856884 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 162
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 14

Conread position: 95-294
Cow position: chr17:27345751-27345948 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 169
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 24

Conread position: 95-295
Cow position: chr17:2287338-2287537 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 164
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 22

Conread position: 95-325
Cow position: chr17:16890071-16890305 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 181
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 43, 22

Conread position: 95-332
Cow position: chr17:13856817-13856576 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 182
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 121, 22

Conread position: 95-384
Cow position: chr17:4295302-4295581 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 95-384
Cow position: chr17:42264455-42264738 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 216
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 88, 12

Conread position: 95-385
Cow position: chr17:20401627-20401898 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 207
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 125, 22

Conread position: 95-398
Cow position: chr17:6002065-6001767 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 203
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 121, 10

Conread position: 95-449
Cow position: chr17:15371002-15371352 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 10

Conread position: 96-280
Cow position: chr17:44852979-44852797 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 158
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 21

Conread position: 96-319
Cow position: chr17:152529-152301 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 184
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 50, 21

Conread position: 96-324
Cow position: chr17:2173831-2174056 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 175
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 120, 9

Conread position: 97-264
Cow position: chr17:2556077-2556242 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 136
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 119, 12

Conread position: 97-281
Cow position: chr17:20183277-20183097 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 152
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 119, 18

Conread position: 97-293
Cow position: chr17:6089207-6089012 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 151
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 119, 12

Conread position: 97-293
Cow position: chr17:24633908-24634103 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 150
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 119, 12

Conread position: 97-294
Cow position: chr17:4060056-4060249 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 151
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 8, 0

Conread position: 106-308
Cow position: chr17:22557583-22557786 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 157
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 65, 84

Conread position: 108-241
Cow position: chr17:26205844-26205710 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 107
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 108, 0

Conread position: 112-206
Cow position: chr17:24781015-24781109 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 79
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 112-294
Cow position: chr17:13929635-13929818 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 143
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 104, 0

Conread position: 112-294
Cow position: chr17:14894120-14894303 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 143
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 104, 0

Conread position: 112-294
Cow position: chr17:18103713-18103535 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 138
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 103, 0

Conread position: 112-575
Cow position: chr17:14325535-14325091 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 113-294
Cow position: chr17:1946944-1947119 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 147
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 10, 0

Conread position: 113-315
Cow position: chr17:1880059-1880268 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 162
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 30, 0

Conread position: 114-277
Cow position: chr17:9653487-9653323 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 137
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 102, 0

Conread position: 114-280
Cow position: chr17:1382845-1382678 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 139
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 102, 0

Conread position: 114-290
Cow position: chr17:20665757-20665580 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 144
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 102, 0

Conread position: 114-293
Cow position: chr17:181332-181514 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 148
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 102, 0

Conread position: 114-293
Cow position: chr17:2262075-2262253 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 147
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 102, 135

Conread position: 114-293
Cow position: chr17:43952593-43952412 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 147
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 102, 25

Conread position: 114-294
Cow position: chr17:15323215-15323395 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 138
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 102, 84

Conread position: 114-330
Cow position: chr17:2147141-2147358 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 159
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 82, 33

Conread position: 115-293
Cow position: chr17:31768069-31767888 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 144
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 101, 0

Conread position: 119-279
Cow position: chr17:43988507-43988668 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 133
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 97, 132

Conread position: 121-308
Cow position: chr17:20087768-20087582 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 144
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 95, 116

Conread position: 123-262
Cow position: chr17:2588285-2588421 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 111
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 93, 16

Conread position: 127-293
Cow position: chr17:34156110-34156279 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 139
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 89, 0

Conread position: 129-258
Cow position: chr17:36987687-36987557 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 112
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 86, 0

Conread position: 129-385
Cow position: chr17:4081615-4081876 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 73

Conread position: 139-294
Cow position: chr17:22429499-22429338 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 134
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 77, 27

Conread position: 144-350
Cow position: chr17:1658569-1658360 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 153
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 27, 90

Conread position: 149-292
Cow position: chr17:602434-602289 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 122
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 64, 0

Conread position: 156-265
Cow position: chr17:602694-602804 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 98
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 60, 0

Conread position: 166-294
Cow position: chr17:20073216-20073096 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 103
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 35, 0

Conread position: 287-542
Cow position: chr17:36987552-36987305 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 190
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 221, 42

Conread position: 383-664
Cow position: chr17:22557909-22558183 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 210
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 80, 8

Conread position: 383-680
Cow position: chr17:152180-151905 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 205
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 178, 20

Conread position: 383-680
Cow position: chr17:20401986-20402272 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 17

Conread position: 383-690
Cow position: chr17:18193503-18193801 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 207
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 129, 40

Conread position: 385-732
Cow position: chr17:18300494-18300144 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 33

Conread position: 387-719
Cow position: chr17:4081967-4082300 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 237
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 121, 55

Conread position: 390-722
Cow position: chr17:42264829-42265161 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 234
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 192, 120

Conread position: 419-719
Cow position: chr17:12670136-12669838 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 216
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 65, 49

Conread position: 432-728
Cow position: chr17:16900206-16899908 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 198
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 18, 67

Conread position: 443-726
Cow position: chr17:19019537-19019818 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 189
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 65, 54

Conread position: 449-732
Cow position: chr17:3708819-3708527 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 206
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 42, 104

Conread position: 461-732
Cow position: chr17:20487982-20488253 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 200
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 127, 17

Conread position: 483-732
Cow position: chr17:24030000-24029748 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 177
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 9, 59

Conread position: 552-702
Cow position: chr17:14052156-14052015 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 118
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 16, 0

Conread position: 585-727
Cow position: chr17:20073136-20072998 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 111
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 65, 15

Conread position: 630-732
Cow position: chr17:2579767-2579866 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 86
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 14, 0

Conread position: 632-732
Cow position: chr17:6259995-6260094 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 86
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 14, 41

Conread position: 632-732
Cow position: chr17:11087573-11087473 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 87
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 14, 33

Conread position: 632-732
Cow position: chr17:13856620-13856519 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 84
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 13, 0

Conread position: 632-732
Cow position: chr17:25737816-25737914 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 84
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 25, 0

Conread position: 632-732
Cow position: chr17:40804970-40805069 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 83
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 32, 0

Show alignments to all cow chromosomes.