Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM10012F06.5 |
| Conread position: | 88-294 |
| Cow position: | chr18:6869106-6868901 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 29 |
| Conread position: | 92-294 |
| Cow position: | chr18:33359023-33359225 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 27 |
| Conread position: | 93-294 |
| Cow position: | chr18:33268983-33269183 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 167 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 24 |
| Conread position: | 95-214 |
| Cow position: | chr18:32652379-32652496 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 95-240 |
| Cow position: | chr18:18089313-18089172 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 121, 22 |
| Conread position: | 95-258 |
| Cow position: | chr18:114551-114711 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 121, 22 |
| Conread position: | 95-259 |
| Cow position: | chr18:45958878-45959039 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 121, 22 |
| Conread position: | 95-274 |
| Cow position: | chr18:52651080-52651257 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 121, 12 |
| Conread position: | 95-280 |
| Cow position: | chr18:51480999-51481183 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 119, 22 |
| Conread position: | 95-288 |
| Cow position: | chr18:2019526-2019335 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 163 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 22 |
| Conread position: | 95-288 |
| Cow position: | chr18:33336027-33336214 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 121, 14 |
| Conread position: | 95-288 |
| Cow position: | chr18:35335639-35335831 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 165 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 22 |
| Conread position: | 95-293 |
| Cow position: | chr18:11274946-11274747 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 158 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 121, 14 |
| Conread position: | 95-293 |
| Cow position: | chr18:16078877-16079074 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 158 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 121, 15 |
| Conread position: | 95-293 |
| Cow position: | chr18:27838156-27837960 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 121, 12 |
| Conread position: | 95-293 |
| Cow position: | chr18:51341846-51342045 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 159 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 121, 12 |
| Conread position: | 95-293 |
| Cow position: | chr18:51462918-51462720 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 121, 18 |
| Conread position: | 95-294 |
| Cow position: | chr18:14416136-14416333 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 157 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 95-294 |
| Cow position: | chr18:16176454-16176260 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 119, 22 |
| Conread position: | 95-294 |
| Cow position: | chr18:17992261-17992063 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 15 |
| Conread position: | 95-294 |
| Cow position: | chr18:19539420-19539227 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 160 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 121, 15 |
| Conread position: | 95-294 |
| Cow position: | chr18:23797807-23798005 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 158 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 121, 22 |
| Conread position: | 95-294 |
| Cow position: | chr18:36508492-36508690 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 155 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 121, 20 |
| Conread position: | 95-294 |
| Cow position: | chr18:37505223-37505421 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 35, 22 |
| Conread position: | 95-294 |
| Cow position: | chr18:41840665-41840467 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 157 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 121, 22 |
| Conread position: | 95-294 |
| Cow position: | chr18:47719424-47719226 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 168 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 22 |
| Conread position: | 95-295 |
| Cow position: | chr18:51310745-51310942 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 166 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 21 |
| Conread position: | 95-314 |
| Cow position: | chr18:53785999-53786217 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 173 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 121, 22 |
| Conread position: | 95-317 |
| Cow position: | chr18:27987220-27987444 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 121, 22 |
| Conread position: | 95-319 |
| Cow position: | chr18:47742178-47742400 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 171 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 121, 22 |
| Conread position: | 95-326 |
| Cow position: | chr18:51258143-51258376 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 22 |
| Conread position: | 95-327 |
| Cow position: | chr18:46877848-46877618 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 162 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 122, 22 |
| Conread position: | 95-328 |
| Cow position: | chr18:14130544-14130774 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 121, 22 |
| Conread position: | 95-332 |
| Cow position: | chr18:1521288-1521543 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 198 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 66, 10 |
| Conread position: | 95-332 |
| Cow position: | chr18:16534138-16534381 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 22 |
| Conread position: | 95-332 |
| Cow position: | chr18:43146766-43146525 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 22 |
| Conread position: | 95-369 |
| Cow position: | chr18:16843178-16842908 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 95-371 |
| Cow position: | chr18:37599382-37599109 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 22 |
| Conread position: | 95-385 |
| Cow position: | chr18:2886861-2886572 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 22 |
| Conread position: | 95-703 |
| Cow position: | chr18:29236969-29237566 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 477 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 22 |
| Conread position: | 95-732 |
| Cow position: | chr18:54171700-54171078 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 483 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 19 |
| Conread position: | 96-220 |
| Cow position: | chr18:54024199-54024077 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 99 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 96-288 |
| Cow position: | chr18:39748739-39748929 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 160 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 21 |
| Conread position: | 97-293 |
| Cow position: | chr18:22602649-22602844 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 119, 12 |
| Conread position: | 97-293 |
| Cow position: | chr18:51689786-51689981 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 119, 12 |
| Conread position: | 112-280 |
| Cow position: | chr18:28973728-28973559 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 112-281 |
| Cow position: | chr18:23944200-23944030 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 150 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 112-293 |
| Cow position: | chr18:40478558-40478739 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 112-294 |
| Cow position: | chr18:32293941-32294116 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 150 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 30, 69 |
| Conread position: | 112-294 |
| Cow position: | chr18:48222054-48222236 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 158 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 87 |
| Conread position: | 112-365 |
| Cow position: | chr18:16877645-16877890 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 186 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 104, 86 |
| Conread position: | 112-371 |
| Cow position: | chr18:29763545-29763798 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 193 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 104, 86 |
| Conread position: | 112-371 |
| Cow position: | chr18:54269758-54270011 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 24, 91 |
| Conread position: | 112-382 |
| Cow position: | chr18:36210943-36210675 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 185 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 99, 43 |
| Conread position: | 114-280 |
| Cow position: | chr18:55088748-55088581 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 139 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 114-293 |
| Cow position: | chr18:24040556-24040373 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 114-293 |
| Cow position: | chr18:33953392-33953218 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 114-294 |
| Cow position: | chr18:19352562-19352742 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 148 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 102, 161 |
| Conread position: | 120-342 |
| Cow position: | chr18:54003708-54003928 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 188, 91 |
| Conread position: | 129-496 |
| Cow position: | chr18:56462711-56462346 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 162 |
| Conread position: | 135-294 |
| Cow position: | chr18:54044524-54044365 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 136-346 |
| Cow position: | chr18:51629645-51629845 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 80, 24 |
| Conread position: | 144-325 |
| Cow position: | chr18:51237716-51237900 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 66, 54 |
| Conread position: | 147-324 |
| Cow position: | chr18:24700905-24700723 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 213-371 |
| Cow position: | chr18:35289593-35289752 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 121, 113 |
| Conread position: | 383-574 |
| Cow position: | chr18:2886489-2886300 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 131, 34 |
| Conread position: | 383-666 |
| Cow position: | chr18:54270113-54270374 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 394-633 |
| Cow position: | chr18:16842798-16842567 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 117, 7 |
| Conread position: | 485-731 |
| Cow position: | chr18:8168916-8169160 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 183 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 129, 28 |
| Conread position: | 487-676 |
| Cow position: | chr18:51275715-51275529 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 21, 7 |
| Conread position: | 510-690 |
| Cow position: | chr18:16878344-16878520 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 107, 16 |
| Conread position: | 511-721 |
| Cow position: | chr18:46868323-46868117 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 81, 55 |
| Conread position: | 555-719 |
| Cow position: | chr18:29765246-29765419 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 626-732 |
| Cow position: | chr18:14130745-14130850 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 88 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 626-732 |
| Cow position: | chr18:36508688-36508792 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 89 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 626-732 |
| Cow position: | chr18:37505419-37505522 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 91 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 627-732 |
| Cow position: | chr18:28973546-28973443 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 90 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 632-732 |
| Cow position: | chr18:33336221-33336324 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 87 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 632-732 |
| Cow position: | chr18:52651278-52651377 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 86 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 13, 52 |
| Conread position: | 637-732 |
| Cow position: | chr18:24700748-24700653 (view UCSC Genome Browser custom track) |
| Alignm length: | 96 |
| Alignm identity: | 82 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.