Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM10012F06.5 |
| Conread position: | 2-488 |
| Cow position: | chr19:32223381-32222905 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 48 |
| Conread position: | 81-294 |
| Cow position: | chr19:28581511-28581299 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 164 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 10, 31 |
| Conread position: | 92-371 |
| Cow position: | chr19:30755341-30755608 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 197 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 124, 25 |
| Conread position: | 95-233 |
| Cow position: | chr19:4532620-4532483 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 119, 22 |
| Conread position: | 95-239 |
| Cow position: | chr19:40887488-40887350 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 46, 10 |
| Conread position: | 95-247 |
| Cow position: | chr19:350127-349976 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 118, 22 |
| Conread position: | 95-251 |
| Cow position: | chr19:39688693-39688846 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 121, 22 |
| Conread position: | 95-274 |
| Cow position: | chr19:7488477-7488655 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 121, 21 |
| Conread position: | 95-279 |
| Cow position: | chr19:439493-439310 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 121, 24 |
| Conread position: | 95-279 |
| Cow position: | chr19:20104876-20105060 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 118, 22 |
| Conread position: | 95-281 |
| Cow position: | chr19:76105-75920 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 153 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 119, 22 |
| Conread position: | 95-287 |
| Cow position: | chr19:10672142-10671951 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 156 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 121, 22 |
| Conread position: | 95-288 |
| Cow position: | chr19:28376648-28376842 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 168 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 18 |
| Conread position: | 95-292 |
| Cow position: | chr19:29209763-29209958 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 164 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 22 |
| Conread position: | 95-293 |
| Cow position: | chr19:772763-772960 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 157 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 121, 22 |
| Conread position: | 95-293 |
| Cow position: | chr19:1032239-1032436 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 167 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 22 |
| Conread position: | 95-293 |
| Cow position: | chr19:7342232-7342431 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 160 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 121, 22 |
| Conread position: | 95-293 |
| Cow position: | chr19:32211909-32211710 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 158 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 121, 22 |
| Conread position: | 95-293 |
| Cow position: | chr19:43143880-43144079 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 121, 12 |
| Conread position: | 95-294 |
| Cow position: | chr19:416825-417022 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 165 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 22 |
| Conread position: | 95-294 |
| Cow position: | chr19:4385644-4385831 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 97, 22 |
| Conread position: | 95-294 |
| Cow position: | chr19:33873590-33873788 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 121, 22 |
| Conread position: | 95-294 |
| Cow position: | chr19:33941774-33941972 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 98, 22 |
| Conread position: | 95-317 |
| Cow position: | chr19:39390672-39390893 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 168 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 121, 22 |
| Conread position: | 95-325 |
| Cow position: | chr19:893451-893224 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 177 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 121, 10 |
| Conread position: | 95-327 |
| Cow position: | chr19:6553766-6553989 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 177 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 61, 22 |
| Conread position: | 95-364 |
| Cow position: | chr19:42248970-42249236 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 121, 22 |
| Conread position: | 95-391 |
| Cow position: | chr19:35376951-35377236 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 22 |
| Conread position: | 95-728 |
| Cow position: | chr19:352829-352193 (view UCSC Genome Browser custom track) |
| Alignm length: | 652 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 22 |
| Conread position: | 95-728 |
| Cow position: | chr19:377738-377117 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 22 |
| Conread position: | 96-293 |
| Cow position: | chr19:40852273-40852077 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 156 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 120, 21 |
| Conread position: | 101-289 |
| Cow position: | chr19:40817533-40817346 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 153 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 115, 14 |
| Conread position: | 112-256 |
| Cow position: | chr19:439282-439137 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 112-262 |
| Cow position: | chr19:2274199-2274048 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 112-274 |
| Cow position: | chr19:32665709-32665867 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 140 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 104, 46 |
| Conread position: | 112-280 |
| Cow position: | chr19:38074-38243 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 141 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 112-294 |
| Cow position: | chr19:172390-172572 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 102, 170 |
| Conread position: | 112-294 |
| Cow position: | chr19:204140-204323 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 112-294 |
| Cow position: | chr19:5729007-5729191 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 112-384 |
| Cow position: | chr19:15954032-15954285 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 104, 21 |
| Conread position: | 113-385 |
| Cow position: | chr19:42648932-42648664 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 117 |
| Conread position: | 114-250 |
| Cow position: | chr19:32244865-32245002 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 114-293 |
| Cow position: | chr19:687246-687426 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 102, 63 |
| Conread position: | 114-293 |
| Cow position: | chr19:52151649-52151467 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 148 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 118-280 |
| Cow position: | chr19:170562-170399 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 127-294 |
| Cow position: | chr19:341416-341583 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 41, 12 |
| Conread position: | 142-324 |
| Cow position: | chr19:4532420-4532245 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 72, 92 |
| Conread position: | 148-732 |
| Cow position: | chr19:163215-162636 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 157 |
| Conread position: | 149-371 |
| Cow position: | chr19:27037735-27037514 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 24, 14 |
| Conread position: | 150-723 |
| Cow position: | chr19:42902-43470 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 210 |
| Conread position: | 158-732 |
| Cow position: | chr19:27052623-27052052 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 96 |
| Conread position: | 172-293 |
| Cow position: | chr19:5208411-5208533 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 221-732 |
| Cow position: | chr19:263092-263612 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 113 |
| Conread position: | 230-721 |
| Cow position: | chr19:137058-136559 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 278, 54 |
| Conread position: | 268-647 |
| Cow position: | chr19:44532448-44532835 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 300 |
| Conread position: | 268-674 |
| Cow position: | chr19:47610411-47610006 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 191 |
| Conread position: | 359-732 |
| Cow position: | chr19:3138021-3138400 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 132 |
| Conread position: | 383-727 |
| Cow position: | chr19:44224814-44224496 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 341, 41 |
| Conread position: | 383-732 |
| Cow position: | chr19:32182965-32182617 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 230 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 23, 6 |
| Conread position: | 417-715 |
| Cow position: | chr19:17018978-17019278 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 27, 18 |
| Conread position: | 488-726 |
| Cow position: | chr19:39689242-39689481 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 20, 56 |
| Conread position: | 497-732 |
| Cow position: | chr19:32222794-32222555 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 184 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 11, 69 |
| Conread position: | 504-727 |
| Cow position: | chr19:39669272-39669050 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 5 |
| Conread position: | 512-705 |
| Cow position: | chr19:189682-189876 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 125, 106 |
| Conread position: | 526-732 |
| Cow position: | chr19:35377417-35377626 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 36, 57 |
| Conread position: | 546-732 |
| Cow position: | chr19:2274110-2273922 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 16, 121 |
| Conread position: | 581-732 |
| Cow position: | chr19:893292-893144 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 29, 13 |
| Conread position: | 610-732 |
| Cow position: | chr19:439097-438977 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 626-732 |
| Cow position: | chr19:172570-172675 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 88 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 626-732 |
| Cow position: | chr19:28581301-28581197 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 88 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 626-732 |
| Cow position: | chr19:39185186-39185082 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 88 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 15, 0 |
Show alignments to all cow chromosomes.