Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM10012F06.5 |
| Conread position: | 90-365 |
| Cow position: | chr20:22206650-22206925 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 28 |
| Conread position: | 91-325 |
| Cow position: | chr20:21393703-21393947 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 20, 226 |
| Conread position: | 94-296 |
| Cow position: | chr20:28463593-28463796 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 21, 10 |
| Conread position: | 95-279 |
| Cow position: | chr20:21914448-21914631 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 56, 22 |
| Conread position: | 95-281 |
| Cow position: | chr20:24614655-24614841 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 156 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 22 |
| Conread position: | 95-288 |
| Cow position: | chr20:28476419-28476603 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 139 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 46, 22 |
| Conread position: | 95-290 |
| Cow position: | chr20:23469538-23469351 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 121, 22 |
| Conread position: | 95-293 |
| Cow position: | chr20:822888-823087 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 163 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 121, 14 |
| Conread position: | 95-293 |
| Cow position: | chr20:13763024-13763222 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 47, 19 |
| Conread position: | 95-294 |
| Cow position: | chr20:3033182-3033380 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 165 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 22 |
| Conread position: | 95-294 |
| Cow position: | chr20:3252013-3251816 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 167 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 22 |
| Conread position: | 95-294 |
| Cow position: | chr20:7116348-7116151 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 158 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 121, 22 |
| Conread position: | 95-294 |
| Cow position: | chr20:15947257-15947060 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 165 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 22 |
| Conread position: | 95-294 |
| Cow position: | chr20:23799003-23799204 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 47, 22 |
| Conread position: | 95-294 |
| Cow position: | chr20:27869318-27869516 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 121, 18 |
| Conread position: | 95-294 |
| Cow position: | chr20:35119691-35119888 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 121, 22 |
| Conread position: | 95-295 |
| Cow position: | chr20:3684367-3684168 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 24 |
| Conread position: | 95-301 |
| Cow position: | chr20:12438640-12438435 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 121, 22 |
| Conread position: | 95-317 |
| Cow position: | chr20:5484310-5484534 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 22 |
| Conread position: | 95-317 |
| Cow position: | chr20:15292131-15292352 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 170 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 121, 22 |
| Conread position: | 95-335 |
| Cow position: | chr20:3270825-3271069 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 187 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 121, 18 |
| Conread position: | 95-347 |
| Cow position: | chr20:9953864-9953617 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 22 |
| Conread position: | 95-371 |
| Cow position: | chr20:13434831-13434566 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 41, 18 |
| Conread position: | 95-371 |
| Cow position: | chr20:31378764-31378492 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 127, 20 |
| Conread position: | 95-401 |
| Cow position: | chr20:8993524-8993210 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 222 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 121, 14 |
| Conread position: | 97-293 |
| Cow position: | chr20:5560592-5560397 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 119, 12 |
| Conread position: | 97-293 |
| Cow position: | chr20:25961226-25961421 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 159 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 44, 12 |
| Conread position: | 112-270 |
| Cow position: | chr20:13665075-13664921 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 30, 84 |
| Conread position: | 112-274 |
| Cow position: | chr20:29948635-29948798 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 112-287 |
| Cow position: | chr20:8313304-8313127 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 152 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 112-288 |
| Cow position: | chr20:15064902-15065078 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 57, 63 |
| Conread position: | 112-293 |
| Cow position: | chr20:28565460-28565278 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 112-294 |
| Cow position: | chr20:5535073-5535256 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 146 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 112-294 |
| Cow position: | chr20:8004090-8003907 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 146 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 112-294 |
| Cow position: | chr20:25850855-25850672 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 112-317 |
| Cow position: | chr20:15097742-15097535 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 38, 62 |
| Conread position: | 112-368 |
| Cow position: | chr20:10856897-10856642 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 104, 77 |
| Conread position: | 114-280 |
| Cow position: | chr20:19438087-19438245 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 114-327 |
| Cow position: | chr20:13679920-13679702 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 210 |
| Conread position: | 116-316 |
| Cow position: | chr20:10845982-10845779 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 159 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 127-294 |
| Cow position: | chr20:28160922-28161089 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 89, 45 |
| Conread position: | 128-354 |
| Cow position: | chr20:22717589-22717361 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 71, 65 |
| Conread position: | 160-293 |
| Cow position: | chr20:19495167-19495301 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 163-732 |
| Cow position: | chr20:18315423-18314892 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 11 |
| Conread position: | 358-732 |
| Cow position: | chr20:8215554-8215939 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 127 |
| Conread position: | 442-651 |
| Cow position: | chr20:22207079-22207285 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 69, 19 |
| Conread position: | 468-719 |
| Cow position: | chr20:35104940-35105188 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 44, 24 |
| Conread position: | 488-732 |
| Cow position: | chr20:8993045-8992803 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 24, 59 |
| Conread position: | 511-722 |
| Cow position: | chr20:3893313-3893525 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 112, 33 |
| Conread position: | 524-719 |
| Cow position: | chr20:11591677-11591879 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 87, 44 |
| Conread position: | 546-717 |
| Cow position: | chr20:25961328-25961502 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 550-719 |
| Cow position: | chr20:20754238-20754070 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 13, 29 |
| Conread position: | 610-723 |
| Cow position: | chr20:35124796-35124907 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 93 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 626-727 |
| Cow position: | chr20:5535254-5535353 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 86 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 626-727 |
| Cow position: | chr20:8003909-8003810 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 85 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 626-732 |
| Cow position: | chr20:29948815-29948922 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 89 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 64, 38 |
| Conread position: | 627-732 |
| Cow position: | chr20:15097559-15097456 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 87 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 630-727 |
| Cow position: | chr20:21914648-21914743 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 83 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 630-732 |
| Cow position: | chr20:13763225-13763325 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 88 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 632-732 |
| Cow position: | chr20:25850671-25850571 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 85 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 13, 33 |
Show alignments to all cow chromosomes.