Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM10012F06.5 |
| Conread position: | 92-279 |
| Cow position: | chr21:20744528-20744346 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 124, 17 |
| Conread position: | 93-707 |
| Cow position: | chr21:2541176-2540570 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 16 |
| Conread position: | 95-234 |
| Cow position: | chr21:47939716-47939849 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 118, 22 |
| Conread position: | 95-239 |
| Cow position: | chr21:3426725-3426868 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 121, 10 |
| Conread position: | 95-250 |
| Cow position: | chr21:47948349-47948502 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 121, 22 |
| Conread position: | 95-260 |
| Cow position: | chr21:216529-216693 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 107, 22 |
| Conread position: | 95-262 |
| Cow position: | chr21:10850320-10850485 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 121, 24 |
| Conread position: | 95-281 |
| Cow position: | chr21:2788752-2788568 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 157 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 22 |
| Conread position: | 95-290 |
| Cow position: | chr21:18820188-18819996 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 159 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 95-293 |
| Cow position: | chr21:11505827-11506035 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 157 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 76, 22 |
| Conread position: | 95-293 |
| Cow position: | chr21:26638225-26638026 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 162 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 121, 22 |
| Conread position: | 95-294 |
| Cow position: | chr21:1191403-1191601 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 121, 22 |
| Conread position: | 95-294 |
| Cow position: | chr21:1291951-1291753 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 157 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 121, 22 |
| Conread position: | 95-294 |
| Cow position: | chr21:3798131-3797933 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 167 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 22 |
| Conread position: | 95-294 |
| Cow position: | chr21:4457066-4457264 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 167 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 22 |
| Conread position: | 95-294 |
| Cow position: | chr21:10566913-10567106 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 121, 24 |
| Conread position: | 95-294 |
| Cow position: | chr21:13123764-13123568 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 22 |
| Conread position: | 95-294 |
| Cow position: | chr21:30562042-30562240 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 160 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 121, 14 |
| Conread position: | 95-294 |
| Cow position: | chr21:35144008-35144194 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 95-294 |
| Cow position: | chr21:35596608-35596804 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 161 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 121, 22 |
| Conread position: | 95-294 |
| Cow position: | chr21:40271437-40271238 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 121, 27 |
| Conread position: | 95-294 |
| Cow position: | chr21:48116341-48116539 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 119, 22 |
| Conread position: | 95-308 |
| Cow position: | chr21:2416468-2416671 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 201, 22 |
| Conread position: | 95-320 |
| Cow position: | chr21:23601434-23601651 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 151, 14 |
| Conread position: | 95-331 |
| Cow position: | chr21:2510891-2511132 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 187 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 121, 12 |
| Conread position: | 95-332 |
| Cow position: | chr21:7267305-7267056 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 50, 24 |
| Conread position: | 95-332 |
| Cow position: | chr21:31559415-31559177 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 178 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 121, 22 |
| Conread position: | 95-350 |
| Cow position: | chr21:21914526-21914779 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 121, 22 |
| Conread position: | 95-359 |
| Cow position: | chr21:23861027-23861280 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 190 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 46, 10 |
| Conread position: | 95-479 |
| Cow position: | chr21:23812115-23812497 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 22 |
| Conread position: | 95-506 |
| Cow position: | chr21:30226259-30226656 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 22 |
| Conread position: | 95-732 |
| Cow position: | chr21:9891832-9892472 (view UCSC Genome Browser custom track) |
| Alignm length: | 663 |
| Alignm identity: | 487 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 22 |
| Conread position: | 96-294 |
| Cow position: | chr21:30599683-30599488 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 157 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 120, 21 |
| Conread position: | 96-306 |
| Cow position: | chr21:4589750-4589541 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 120, 11 |
| Conread position: | 97-279 |
| Cow position: | chr21:37045152-37045333 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 118, 12 |
| Conread position: | 97-280 |
| Cow position: | chr21:11453414-11453232 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 119, 12 |
| Conread position: | 97-293 |
| Cow position: | chr21:6339808-6340005 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 157 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 119, 12 |
| Conread position: | 97-293 |
| Cow position: | chr21:26650283-26650478 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 119, 12 |
| Conread position: | 99-294 |
| Cow position: | chr21:2529884-2529690 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 159 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 34, 18 |
| Conread position: | 100-690 |
| Cow position: | chr21:4183765-4184331 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 17 |
| Conread position: | 104-324 |
| Cow position: | chr21:2502136-2502360 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 30, 56 |
| Conread position: | 107-294 |
| Cow position: | chr21:33251755-33251943 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 13, 83 |
| Conread position: | 112-294 |
| Cow position: | chr21:146178-146360 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 104, 70 |
| Conread position: | 112-294 |
| Cow position: | chr21:2883493-2883311 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 151 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 104, 160 |
| Conread position: | 112-294 |
| Cow position: | chr21:3779021-3779204 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 112-294 |
| Cow position: | chr21:34293271-34293453 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 158 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 112-361 |
| Cow position: | chr21:36714884-36715131 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 34, 87 |
| Conread position: | 112-712 |
| Cow position: | chr21:359289-359887 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 479 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 40 |
| Conread position: | 113-314 |
| Cow position: | chr21:4087057-4087260 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 29, 145 |
| Conread position: | 113-686 |
| Cow position: | chr21:9870007-9870551 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 20 |
| Conread position: | 114-279 |
| Cow position: | chr21:12055744-12055578 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 136 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 114-293 |
| Cow position: | chr21:4090906-4091086 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 146 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 114-293 |
| Cow position: | chr21:39425320-39425502 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 147 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 114-295 |
| Cow position: | chr21:3615569-3615750 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 155 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 85 |
| Conread position: | 115-279 |
| Cow position: | chr21:4077097-4077260 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 101, 84 |
| Conread position: | 118-293 |
| Cow position: | chr21:46915849-46916025 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 119-294 |
| Cow position: | chr21:34258728-34258551 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 147 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 127-294 |
| Cow position: | chr21:27282655-27282823 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 135-342 |
| Cow position: | chr21:2674333-2674124 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 81, 51 |
| Conread position: | 150-292 |
| Cow position: | chr21:2716425-2716282 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 127 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 193-727 |
| Cow position: | chr21:29105-29612 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 130 |
| Conread position: | 383-652 |
| Cow position: | chr21:21947046-21946791 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 383-727 |
| Cow position: | chr21:21926130-21925790 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 233 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 61, 29 |
| Conread position: | 415-732 |
| Cow position: | chr21:2710744-2711037 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 236 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 99, 33 |
| Conread position: | 483-719 |
| Cow position: | chr21:23861609-23861846 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 179 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 77, 30 |
| Conread position: | 528-732 |
| Cow position: | chr21:2883412-2883209 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 40, 11 |
| Conread position: | 548-732 |
| Cow position: | chr21:27565747-27565935 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 80, 17 |
| Conread position: | 549-727 |
| Cow position: | chr21:21915040-21915221 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 561-727 |
| Cow position: | chr21:6109926-6110094 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 6, 77 |
| Conread position: | 572-718 |
| Cow position: | chr21:23812552-23812699 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 43, 74 |
| Conread position: | 626-717 |
| Cow position: | chr21:1191599-1191687 (view UCSC Genome Browser custom track) |
| Alignm length: | 92 |
| Alignm identity: | 80 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 626-727 |
| Cow position: | chr21:33251941-33252041 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 88 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 626-732 |
| Cow position: | chr21:146358-146462 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 88 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 626-732 |
| Cow position: | chr21:10567104-10567208 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 89 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 626-732 |
| Cow position: | chr21:27282821-27282926 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 86 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 626-732 |
| Cow position: | chr21:30562238-30562342 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 88 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 626-732 |
| Cow position: | chr21:35144192-35144296 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 90 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 632-723 |
| Cow position: | chr21:2502329-2502421 (view UCSC Genome Browser custom track) |
| Alignm length: | 93 |
| Alignm identity: | 80 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 632-729 |
| Cow position: | chr21:3779205-3779303 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 87 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 632-732 |
| Cow position: | chr21:40271242-40271141 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 86 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 635-727 |
| Cow position: | chr21:28735672-28735764 (view UCSC Genome Browser custom track) |
| Alignm length: | 93 |
| Alignm identity: | 78 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.